Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.8e-162 575.9 290 100.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 4.2e-127 458.4 292 79.8
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 3.3e-124 448.7 293 79.2
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.4e-122 443.4 293 77.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 1.5e-121 439.9 294 77.6
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.3e-120 436.8 284 77.8
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 2.2e-120 436.0 293 77.5
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 4.2e-119 431.8 291 76.3
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 7.6e-113 411.0 297 73.7
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 5.5e-111 404.8 227 84.6
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 1.8e-109 399.8 260 78.1
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 3.9e-109 398.7 293 72.7
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 7.4e-108 394.4 266 76.7
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.6e-107 393.3 300 69.0
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 2.1e-107 392.9 306 68.3
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 1.4e-106 390.2 288 69.8
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 6.9e-106 387.9 272 73.5
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 4.5e-105 385.2 226 80.1
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.0e-104 384.0 305 67.9
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.3e-104 383.6 226 80.1
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.7e-104 383.3 228 80.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 2.2e-104 382.9 300 69.7
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.1e-103 380.6 237 78.1
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.9e-103 379.8 305 67.2
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.2e-103 379.0 227 79.7
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 9.3e-103 377.5 270 70.4
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 2.1e-102 376.3 306 66.7
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 2.7e-102 375.9 306 66.7
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 3.6e-102 375.6 305 65.6
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.0e-101 374.0 228 78.5
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.3e-101 373.6 278 69.1
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.3e-101 373.6 300 66.3
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 3.0e-101 372.5 281 67.3
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 3.9e-101 372.1 305 65.9
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 8.7e-101 370.9 291 67.4
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 3.3e-100 369.0 286 67.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.3e-100 368.6 303 66.0
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.7e-100 368.2 223 77.1
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 5.7e-100 368.2 300 65.7
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 5.7e-100 368.2 305 65.2
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 5.7e-100 368.2 285 69.1
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 7.4e-100 367.9 234 73.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 7.4e-100 367.9 285 67.4
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 7.4e-100 367.9 285 67.0
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 7.4e-100 367.9 237 73.8
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 9.7e-100 367.5 275 69.1
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 9.7e-100 367.5 287 66.2
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 1.3e-99 367.1 289 65.7
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.6e-99 366.7 298 66.8
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 2.8e-99 365.9 265 68.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 2.8e-99 365.9 226 76.1
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 3.7e-99 365.5 301 63.5
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 6.3e-99 364.8 299 63.2
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 8.2e-99 364.4 269 67.3
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 1.8e-98 363.2 234 75.6
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 2.4e-98 362.8 272 69.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 4.1e-98 362.1 229 76.4
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 6.9e-98 361.3 228 75.0
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 6.9e-98 361.3 224 77.2
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.4e-97 359.0 211 80.1
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 7.7e-97 357.8 344 59.3
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 1.0e-96 357.5 226 75.7
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.3e-96 357.1 234 72.2
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 7.2e-95 351.3 231 73.6
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.2e-94 350.5 358 55.6
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 2.1e-94 349.7 289 62.6
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.4e-93 347.1 201 79.1
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.5e-92 343.6 283 65.4
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.5e-92 343.6 271 64.2
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 2.0e-92 343.2 223 72.6
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 9.7e-92 340.9 283 64.0
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 2.8e-91 339.3 302 60.6
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 3.1e-90 335.9 278 67.3
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 6.9e-90 334.7 230 70.0
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.3e-88 330.5 306 62.1
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 1.7e-88 330.1 271 67.5
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 6.5e-88 328.2 277 62.1
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 2.1e-86 323.2 226 69.5
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 3.9e-85 318.9 280 59.3
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 3.9e-85 318.9 296 58.8
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 3.3e-84 315.8 278 60.8
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 4.4e-84 315.5 243 65.4
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 1.3e-83 313.9 183 76.5
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 4.8e-83 312.0 243 64.6
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 4.8e-83 312.0 293 57.0
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 8.2e-83 311.2 226 69.0
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 1.1e-82 310.8 289 58.1
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.4e-82 310.5 287 58.2
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.4e-82 310.5 287 58.2
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 3.1e-82 309.3 295 58.0
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 7.0e-82 308.1 287 57.8
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 4.5e-81 305.4 240 67.9
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 7.7e-81 304.7 242 62.8
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 1.0e-80 304.3 242 63.6
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 2.9e-80 302.8 242 62.4
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 4.2e-79 298.9 292 56.5
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.8e-77 293.5 266 57.5
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 3.0e-77 292.7 278 57.2
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 2.6e-76 289.7 221 69.7
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.3e-75 287.3 234 60.7
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 3.5e-73 279.3 233 56.7
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 3.5e-73 279.3 277 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 1.7e-72 276.9 265 54.3
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 8.5e-72 274.6 179 71.5
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.6e-70 270.4 151 80.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 6.1e-70 268.5 151 81.5
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 8.8e-69 264.6 247 56.3
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 7.0e-66 255.0 226 62.4
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.5e-63 247.3 143 78.3
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.4e-58 230.7 217 63.1
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.2e-57 227.6 164 67.7
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.9e-55 220.3 147 74.8
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.5e-55 219.9 149 71.8
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 5.6e-55 218.8 139 72.7
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.7e-48 197.2 145 69.7
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.4e-42 175.6 137 65.7
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 1.7e-35 154.1 178 37.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.7e-33 146.7 198 40.4
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.7e-32 144.1 155 58.1
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 3.1e-21 106.7 68 75.0
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.1e-18 98.2 137 43.1
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 9.3e-10 68.6 35 80.0
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.2e-09 68.2 103 43.7
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 5.1e-08 62.8 143 35.7
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 7.4e-07 58.9 114 30.7
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 9.6e-07 58.5 124 31.5
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 2.1e-06 57.4 99 31.3
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 4.8e-06 56.2 100 31.0
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 8.1e-06 55.5 101 32.7
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 8.1e-06 55.5 101 29.7


User provided reference genes

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