Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 1.5e-82 309.7 176 100.0
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 7.5e-47 191.0 177 71.8
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 2.9e-46 189.1 177 68.9
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 8.3e-46 187.6 176 68.8
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 6.0e-44 181.4 176 67.0
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.9e-42 176.4 180 70.6
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 8.1e-41 171.0 176 64.2
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 7.1e-37 157.9 176 63.6
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 6.0e-36 154.8 176 64.2
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.9e-34 149.8 180 60.0
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 2.5e-34 149.4 176 60.2
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 7.3e-34 147.9 176 60.2
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 1.4e-32 143.7 179 57.0
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 4.0e-32 142.1 176 59.7
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 4.0e-32 142.1 179 57.0
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 8.9e-32 141.0 175 60.0
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 1.2e-31 140.6 176 59.7
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 1.2e-31 140.6 176 56.2
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.5e-31 140.2 176 59.1
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 1.5e-31 140.2 176 59.1
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 3.4e-31 139.0 180 57.8
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 2.2e-30 136.3 181 55.2
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 2.2e-30 136.3 176 58.5
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 2.9e-30 136.0 178 59.6
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 3.8e-30 135.6 118 65.3
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.8e-30 135.6 164 56.7
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.8e-30 135.6 182 59.3
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 3.8e-30 135.6 84 90.5
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 8.4e-30 134.4 153 56.2
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 8.4e-30 134.4 153 56.2
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 8.4e-30 134.4 102 75.5
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 8.4e-30 134.4 111 66.7
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 8.4e-30 134.4 99 78.8
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.1e-29 134.0 92 73.9
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 1.1e-29 134.0 183 58.5
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 7.1e-29 131.3 161 54.0
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 9.2e-29 131.0 151 58.9
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 9.2e-29 131.0 154 59.7
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.2e-28 130.6 113 69.0
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.6e-28 130.2 164 55.5
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 1.6e-28 130.2 183 57.4
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 2.7e-28 129.4 110 61.8
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 3.5e-28 129.0 96 79.2
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 4.6e-28 128.6 180 58.9
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 7.8e-28 127.9 165 55.2
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 1.0e-27 127.5 178 54.5
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 1.3e-27 127.1 83 83.1
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.3e-27 127.1 174 56.9
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.3e-27 127.1 178 54.5
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 1.3e-27 127.1 146 58.9
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 1.7e-27 126.7 100 74.0
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.7e-27 126.7 101 68.3
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 1.7e-27 126.7 176 55.7
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 2.3e-27 126.3 100 75.0
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 2.3e-27 126.3 100 74.0
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 3.9e-27 125.6 103 69.9
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 3.9e-27 125.6 131 52.7
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 5.1e-27 125.2 142 61.3
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 6.6e-27 124.8 94 71.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 8.7e-27 124.4 103 68.9
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 8.7e-27 124.4 176 51.1
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.5e-26 123.6 88 78.4
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 1.9e-26 123.2 181 53.6
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.9e-26 123.2 116 63.8
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 3.3e-26 122.5 96 72.9
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 3.3e-26 122.5 96 72.9
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 3.3e-26 122.5 96 72.9
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 3.3e-26 122.5 96 72.9
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 4.3e-26 122.1 177 54.2
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 7.3e-26 121.3 151 58.3
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 7.3e-26 121.3 177 54.2
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.2e-25 120.6 140 59.3
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.6e-25 120.2 183 51.4
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.6e-25 120.2 177 54.2
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 2.1e-25 119.8 149 57.0
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 8.1e-25 117.9 178 53.9
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 1.1e-24 117.5 154 53.9
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 1.4e-24 117.1 163 47.9
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.8e-24 116.7 145 56.6
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 7.6e-23 111.3 150 46.0
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 2.2e-22 109.8 179 49.2
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 6.4e-22 108.2 80 70.0
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 1.1e-21 107.5 120 65.0
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 2.1e-20 103.2 96 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 4.6e-20 102.1 82 61.0
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 7.8e-20 101.3 173 39.3
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 1.3e-19 100.5 126 45.2
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 1.1e-18 97.4 74 68.9
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 9.6e-18 94.4 80 70.0
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.3e-17 94.0 80 70.0
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 3.8e-14 82.4 41 78.0
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 3.8e-14 82.4 160 48.8
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 8.4e-14 81.3 106 50.9
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 2.4e-13 79.7 131 48.9
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 7.1e-13 78.2 130 45.4
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 3.5e-12 75.9 137 49.6
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 1.5e-10 70.5 52 73.1
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 4.0e-08 62.4 121 46.3
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 5.3e-08 62.0 35 85.7
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 2.9e-06 56.2 89 51.7
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 4.9e-06 55.5 30 73.3


User provided reference genes

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