Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.8e-159 563.9 279 100.0
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-146 522.3 279 94.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.0e-114 415.6 282 76.2
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.3e-111 404.8 263 78.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 1.2e-110 403.7 279 73.8
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 9.9e-110 400.6 262 79.4
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 9.9e-110 400.6 246 81.7
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.2e-109 399.4 270 74.8
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 8.4e-109 397.5 279 73.1
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.1e-108 397.1 280 75.7
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 1.4e-108 396.7 270 74.8
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.1e-106 388.3 271 73.1
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.7e-106 387.9 271 73.1
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.9e-105 386.3 219 84.5
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 4.3e-105 385.2 271 72.7
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.6e-105 384.8 273 71.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.6e-104 382.1 215 85.6
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.1e-103 379.0 213 84.5
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 3.1e-103 379.0 235 80.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 6.9e-103 377.9 218 83.5
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 1.5e-102 376.7 218 83.5
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 1.5e-102 376.7 230 80.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.6e-102 375.9 230 80.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.5e-102 375.2 226 80.1
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 5.8e-102 374.8 223 80.3
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.8e-102 374.8 295 67.1
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 7.6e-102 374.4 235 79.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 7.6e-102 374.4 219 83.6
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 7.6e-102 374.4 242 75.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 9.9e-102 374.0 219 82.6
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 3.8e-101 372.1 220 81.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-100 370.5 234 81.6
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 1.1e-100 370.5 269 68.4
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.1e-100 370.5 213 84.5
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.4e-100 370.2 218 80.7
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 4.2e-100 368.6 256 75.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 7.1e-100 367.9 224 79.5
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 6.0e-99 364.8 236 76.3
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 6.0e-99 364.8 240 75.0
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 7.9e-99 364.4 215 80.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.8e-98 363.2 209 83.7
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 3.9e-98 362.1 235 74.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.1e-98 361.7 267 71.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 8.7e-98 360.9 234 77.4
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.1e-97 360.5 218 80.3
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.5e-97 360.1 218 79.4
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.5e-97 360.1 219 82.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 3.3e-97 359.0 231 77.5
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.3e-97 359.0 228 76.3
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 4.3e-97 358.6 215 78.6
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 7.4e-97 357.8 235 75.7
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 7.4e-97 357.8 235 75.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 7.4e-97 357.8 235 75.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 7.4e-97 357.8 235 75.7
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 7.4e-97 357.8 235 76.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 9.6e-97 357.5 220 75.9
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-96 356.7 235 75.7
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.8e-96 355.9 233 75.5
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 3.7e-96 355.5 227 77.5
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 6.2e-96 354.8 228 76.8
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 8.1e-96 354.4 235 75.3
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.1e-95 354.0 234 75.6
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.1e-95 354.0 227 74.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-95 354.0 221 77.8
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.8e-95 353.2 234 75.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-95 353.2 234 75.6
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 3.1e-95 352.4 210 82.4
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.0e-95 352.1 232 72.4
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 6.9e-95 351.3 240 71.2
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 9.0e-95 350.9 234 75.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.2e-94 350.5 245 72.2
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 1.5e-94 350.1 216 79.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-94 349.7 224 76.3
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.4e-94 349.0 213 79.8
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.4e-94 349.0 213 79.8
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.0e-93 347.4 244 70.9
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.7e-93 346.7 219 76.7
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.7e-93 346.7 282 65.6
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.2e-93 346.3 215 77.7
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 2.9e-93 345.9 230 73.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 8.4e-93 344.4 219 76.3
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.4e-92 343.6 213 78.4
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-91 338.2 226 74.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 7.9e-91 337.8 218 74.3
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.3e-90 337.0 231 71.0
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.3e-90 336.3 226 75.2
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.3e-90 336.3 226 75.2
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 5.1e-90 335.1 234 71.4
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 8.7e-90 334.3 226 74.8
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.9e-89 333.2 226 74.3
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 2.5e-89 332.8 232 70.7
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 3.3e-89 332.4 226 74.3
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 4.3e-89 332.0 213 76.5
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 4.3e-89 332.0 235 70.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.1e-88 329.7 217 74.2
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.8e-88 329.3 216 73.1
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 6.3e-88 328.2 212 75.5
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.2e-88 327.8 231 69.3
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 8.2e-88 327.8 230 71.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.1e-87 325.9 220 75.0
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 6.9e-87 324.7 224 72.8
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.9e-87 324.7 229 71.6
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.2e-86 323.9 212 74.1
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-86 323.9 229 71.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.2e-86 323.9 229 71.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.5e-86 323.6 277 63.2
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 2.0e-86 323.2 213 74.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 3.4e-86 322.4 212 73.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 4.5e-86 322.0 209 73.2
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.5e-86 322.0 212 73.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.5e-86 322.0 183 85.2
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.0e-85 320.9 213 73.7
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.3e-85 320.5 254 64.6
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-85 320.5 277 62.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.3e-85 320.5 225 69.3
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.7e-85 320.1 217 71.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.9e-85 319.3 213 72.8
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.5e-85 318.2 213 74.2
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-84 317.0 208 75.5
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 3.2e-84 315.8 279 60.9
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 4.2e-84 315.5 224 68.3
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 4.2e-84 315.5 210 73.3
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 7.2e-84 314.7 223 70.0
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 9.3e-84 314.3 220 70.5
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.1e-83 313.2 223 70.0
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.7e-83 312.8 274 61.7
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.1e-83 311.6 212 69.3
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 8.7e-82 307.8 224 66.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.9e-81 306.6 243 65.8
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 7.4e-81 304.7 205 75.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 3.7e-80 302.4 211 72.0
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.4e-79 300.4 216 66.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.4e-79 300.4 216 66.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.8e-79 300.1 207 70.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 3.1e-79 299.3 216 66.2
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 3.1e-79 299.3 216 66.2
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 3.1e-79 299.3 216 66.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-79 298.9 216 66.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 9.1e-79 297.7 222 66.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.7e-77 293.5 182 79.7
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.2e-77 293.1 190 75.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 5.0e-69 265.4 245 58.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 2.7e-67 259.6 204 64.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.9e-66 255.8 324 49.7
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 4.8e-64 248.8 223 61.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 6.3e-64 248.4 240 54.2
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.4e-63 247.3 214 59.8
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.1e-63 246.1 143 83.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 9.1e-63 244.6 143 83.2
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.6e-62 243.8 216 58.3
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 9.7e-57 224.6 135 80.7
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 3.1e-55 219.5 222 53.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.5e-52 210.7 235 49.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 6.8e-50 201.8 235 48.5
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.0e-42 177.9 190 53.7
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.2e-42 175.6 168 53.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.8e-40 169.9 143 60.1
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 3.0e-29 133.3 115 59.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.2e-27 127.9 76 78.9
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 4.1e-15 86.3 89 48.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 9.2e-15 85.1 64 64.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 2.5e-12 77.0 73 53.4
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 5.6e-12 75.9 68 54.4
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 6.8e-10 68.9 81 48.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 7.6e-09 65.5 72 51.4
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.2e-08 63.9 40 75.0
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 2.9e-08 63.5 44 70.5


User provided reference genes

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