Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 8.6e-252 873.2 460 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 7.7e-160 567.8 514 62.5
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 9.5e-158 560.8 517 64.2
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 6.3e-154 548.1 517 61.9
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.8e-153 546.6 515 58.8
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 3.0e-148 529.3 512 58.4
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 7.0e-145 518.1 507 57.0
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.2e-144 517.3 512 58.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-143 513.8 498 58.2
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-143 513.5 507 57.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-143 513.5 507 57.6
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.9e-143 512.3 514 56.8
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.3e-142 508.8 475 63.4
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.3e-142 508.8 475 63.4
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.3e-142 508.8 475 63.4
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.3e-142 508.8 475 63.4
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.3e-142 508.8 475 63.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 3.6e-141 505.8 517 57.1
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-140 502.3 506 56.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 4.9e-138 495.4 468 59.0
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-135 486.9 516 55.4
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 3.0e-135 486.1 507 56.0
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.0e-135 486.1 513 53.8
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.0e-135 485.3 516 55.2
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.3e-134 482.3 482 57.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-133 479.2 514 54.7
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-129 467.2 506 54.3
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 9.2e-129 464.5 516 52.7
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 7.8e-128 461.5 510 52.7
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-127 459.9 514 53.1
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.3e-126 454.9 514 52.7
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-123 447.6 514 51.8
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.2e-122 443.4 517 54.0
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.1e-121 441.0 512 51.2
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 5.1e-119 432.2 517 49.5
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.6e-117 427.2 451 58.1
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.1e-116 424.5 517 49.1
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-116 424.5 517 49.1
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 5.8e-115 418.7 517 48.7
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.7e-114 417.2 426 55.4
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 2.9e-114 416.4 508 50.0
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 6.4e-114 415.2 497 51.7
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.7e-111 407.1 512 49.2
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-110 404.4 461 55.1
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.5e-110 403.3 430 56.7
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 7.3e-110 401.7 445 53.0
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 5.4e-105 385.6 511 47.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 9.3e-105 384.8 489 48.1
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 1.8e-103 380.6 516 47.3
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-102 377.9 527 47.2
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-100 369.4 408 54.2
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 3.2e-97 359.8 508 45.1
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.5e-94 350.1 447 48.3
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.6e-94 349.0 416 50.2
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 2.3e-87 327.0 400 49.2
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.6e-85 320.9 400 48.2
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.1e-84 316.6 463 45.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.2e-82 310.5 473 46.1
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 2.5e-81 307.0 339 52.5
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 4.5e-75 286.2 306 56.9
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 7.7e-75 285.4 285 56.8
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-74 284.3 344 50.6
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 2.5e-73 280.4 355 51.5
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 6.7e-71 272.3 423 43.7
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 5.3e-68 262.7 226 62.4
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-66 257.3 470 40.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 2.2e-61 240.7 223 65.0
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 8.5e-58 228.8 471 38.2
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-55 220.3 287 50.5
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 2.6e-54 217.2 197 60.9
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.2e-51 208.4 170 65.9
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 3.5e-51 206.8 200 54.5
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 3.5e-51 206.8 200 54.5
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 3.5e-51 206.8 200 54.5
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 3.5e-51 206.8 200 54.5
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 3.5e-51 206.8 200 54.5
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.3e-50 204.9 284 45.4
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.5e-50 202.6 263 49.8
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 8.5e-50 202.2 241 51.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 6.8e-47 192.6 159 66.7
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.2e-45 187.6 133 75.9
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-42 178.3 159 62.3
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 4.7e-40 169.9 145 64.8
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 8.0e-40 169.1 180 57.8
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-38 165.2 123 72.4
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 2.6e-38 164.1 143 60.1
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 3.7e-37 160.2 135 63.7
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.0e-36 156.0 151 55.6
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 9.2e-36 155.6 96 80.2
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.2e-35 155.2 216 43.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.5e-35 153.3 223 43.5
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 4.5e-35 153.3 223 43.5
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.0e-34 152.1 413 34.1
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 1.1e-33 148.7 123 66.7
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.1e-32 142.9 114 69.3
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.0e-31 142.1 139 57.6
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.2e-31 139.8 112 67.9
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-30 137.9 132 58.3
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.6e-30 137.5 136 57.4
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 3.7e-29 133.7 113 58.4
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.4e-29 132.9 112 59.8
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 4.1e-28 130.2 168 48.8
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 4.6e-27 126.7 108 58.3
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 2.3e-26 124.4 75 81.3
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 8.6e-26 122.5 143 51.0
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 8.6e-26 122.5 75 80.0
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.1e-25 122.1 345 31.3
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.9e-25 121.3 135 54.8
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.5e-25 120.9 125 52.8
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 4.3e-25 120.2 117 58.1
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.6e-24 118.2 132 50.8
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 3.6e-24 117.1 88 67.0
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.7e-24 116.7 159 45.3
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.6e-22 110.9 125 53.6
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 7.5e-22 109.4 133 49.6
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-21 108.6 90 60.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.9e-20 104.8 83 62.7
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.9e-20 104.8 89 59.6
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-20 104.4 152 45.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 7.0e-20 102.8 86 57.0
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-19 101.7 84 65.5
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 2.7e-19 100.9 153 43.8
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-16 92.0 69 65.2
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 4.7e-16 90.1 82 54.9
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.3e-15 87.8 65 67.7
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.0e-15 87.0 83 55.4
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 6.4e-13 79.7 59 67.8
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 4.1e-12 77.0 45 80.0
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 7.1e-12 76.3 69 62.3
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 7.1e-12 76.3 61 62.3
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 2.1e-11 74.7 67 61.2
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 4.6e-11 73.6 54 64.8
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-10 72.0 56 60.7
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-10 72.0 56 60.7
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.7e-10 71.6 60 60.0
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.6e-10 69.7 46 69.6
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 1.9e-09 68.2 45 66.7
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 4.3e-09 67.0 42 69.0
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 7.3e-09 66.2 62 50.0
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 1.4e-07 62.0 35 80.0
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 8.9e-07 59.3 130 35.4
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.2e-06 58.9 47 66.0


User provided reference genes

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