Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 1.6e-49 199.1 103 100.0
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 8.9e-40 166.8 99 87.9
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 2.7e-28 128.6 96 69.8
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 3.5e-28 128.3 96 69.8
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.0e-27 126.7 99 61.6
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.0e-27 126.7 99 61.6
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 6.6e-27 124.0 97 67.0
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 3.3e-26 121.7 93 65.6
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 4.3e-26 121.3 97 66.0
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 9.5e-26 120.2 99 62.6
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 2.1e-25 119.0 97 61.9
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 2.8e-25 118.6 93 65.6
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 3.1e-24 115.2 95 62.1
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 3.4e-23 111.7 79 68.4
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 7.6e-23 110.5 99 58.6
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 1.7e-22 109.4 99 55.6
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.9e-22 108.6 78 69.2
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 3.8e-22 108.2 96 61.5
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 3.8e-22 108.2 96 61.5
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 3.8e-22 108.2 96 61.5
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 3.8e-22 108.2 96 61.5
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 3.8e-22 108.2 80 67.5
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 3.2e-21 105.1 98 57.1
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 4.2e-21 104.8 95 61.1
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 1.2e-20 103.2 95 56.8
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 2.7e-20 102.1 85 58.8
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.7e-20 102.1 107 52.3
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 3.5e-20 101.7 78 64.1
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 4.6e-20 101.3 78 62.8
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 4.6e-20 101.3 78 61.5
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 7.8e-20 100.5 78 64.1
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.0e-19 100.1 98 55.1
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.0e-19 100.1 94 50.0
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 2.3e-19 99.0 76 63.2
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 3.0e-19 98.6 101 52.5
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 3.9e-19 98.2 101 53.5
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 6.6e-19 97.4 87 59.8
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 8.7e-19 97.1 89 58.4
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 1.1e-18 96.7 76 61.8
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 7.3e-18 94.0 92 52.2
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 7.3e-18 94.0 102 50.0
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.6e-17 92.8 98 50.0
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.8e-17 92.0 102 49.0
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 2.8e-17 92.0 102 48.0
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 2.8e-17 92.0 83 56.6
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 3.6e-17 91.7 85 57.6
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 4.8e-17 91.3 102 49.0
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 4.8e-17 91.3 78 60.3
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 1.1e-16 90.1 74 59.5
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 1.4e-16 89.7 84 53.6
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.8e-16 89.4 106 48.1
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 2.4e-16 89.0 80 62.5
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 2.4e-16 89.0 80 57.5
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 4.0e-16 88.2 99 48.5
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 4.0e-16 88.2 79 50.6
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.0e-16 88.2 80 55.0
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 5.3e-16 87.8 84 56.0
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 6.9e-16 87.4 88 54.5
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 9.0e-16 87.0 68 61.8
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.2e-15 86.7 83 51.8
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.2e-15 86.7 81 53.1
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 1.5e-15 86.3 100 49.0
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 4.4e-15 84.7 84 52.4
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 5.8e-15 84.3 84 52.4
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 5.8e-15 84.3 84 52.4
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 2.9e-14 82.0 79 53.2
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 3.8e-14 81.6 79 54.4
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 3.8e-14 81.6 79 54.4
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 4.9e-14 81.3 92 51.1
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 6.4e-14 80.9 92 50.0
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 8.4e-14 80.5 89 48.3
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 1.4e-13 79.7 92 50.0
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 1.4e-13 79.7 92 50.0
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.9e-13 79.3 92 50.0
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 1.9e-13 79.3 79 53.2
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.9e-13 79.3 80 53.8
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 2.4e-13 79.0 112 43.8
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 3.2e-13 78.6 80 53.8
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 5.4e-13 77.8 79 50.6
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.4e-13 77.8 91 47.3
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 7.1e-13 77.4 79 53.2
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.2e-12 76.6 60 63.3
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 1.2e-12 76.6 93 46.2
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 1.2e-12 76.6 82 51.2
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 1.3e-11 73.2 77 51.9
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 3.0e-11 72.0 83 53.0
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 5.1e-11 71.2 76 50.0
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 1.5e-10 69.7 82 46.3
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 2.5e-10 68.9 96 39.6
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 2.5e-10 68.9 96 39.6
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 5.6e-10 67.8 80 50.0
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 5.6e-10 67.8 80 50.0
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 7.3e-10 67.4 80 50.0
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 7.3e-10 67.4 81 44.4
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 1.3e-09 66.6 80 48.8
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 1.6e-09 66.2 58 58.6
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 6.2e-09 64.3 77 45.5
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 8.1e-09 63.9 90 44.4
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 9.9e-07 57.0 78 42.3
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 1.7e-06 56.2 64 50.0
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 4.9e-06 54.7 105 37.1


User provided reference genes

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