Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 6.3e-163 577.4 297 100.0
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 3.3e-119 432.2 298 77.2
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 4.7e-118 428.3 296 76.7
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 6.8e-117 424.5 296 74.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 5.6e-111 404.8 302 71.9
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 5.6e-111 404.8 293 74.4
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.3e-107 393.7 296 70.6
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.6e-105 386.7 297 69.4
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 3.9e-104 382.1 264 78.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 5.6e-103 378.3 250 75.2
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 9.6e-103 377.5 264 74.6
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 8.1e-102 374.4 296 65.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.4e-101 372.9 296 66.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 6.9e-101 371.3 251 73.3
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.2e-100 370.5 248 73.8
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.5e-100 370.2 252 74.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 5.8e-100 368.2 248 74.6
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.3e-99 367.1 268 73.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.3e-99 367.1 242 76.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.9e-99 365.9 246 72.8
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 6.4e-99 364.8 257 71.6
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.1e-98 364.0 263 70.3
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.9e-98 363.2 286 66.1
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.2e-98 362.5 248 73.0
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.2e-98 362.1 247 72.5
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 5.4e-98 361.7 247 72.5
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 1.6e-97 360.1 257 69.3
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.1e-97 359.8 257 69.3
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 2.1e-97 359.8 249 72.3
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 4.6e-97 358.6 244 72.1
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 7.8e-97 357.8 297 63.6
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.3e-96 357.1 247 71.3
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.7e-96 356.7 251 71.7
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.3e-96 356.3 296 62.8
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.3e-96 356.3 296 63.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 2.3e-96 356.3 287 66.6
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 2.3e-96 356.3 247 70.4
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 5.1e-96 355.1 248 71.8
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 8.7e-96 354.4 246 69.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 8.7e-96 354.4 289 65.1
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.1e-95 354.0 280 67.1
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.5e-95 353.6 250 68.8
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 4.3e-95 352.1 251 67.7
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 7.3e-95 351.3 252 71.0
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 7.3e-95 351.3 239 72.4
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 9.6e-95 350.9 279 64.5
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.3e-94 350.5 246 69.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.8e-94 348.6 285 62.8
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 6.2e-94 348.2 251 67.7
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 6.2e-94 348.2 303 63.0
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 8.1e-94 347.8 244 71.3
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.1e-93 347.4 252 67.9
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.4e-93 347.1 283 64.7
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.8e-93 346.7 249 68.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.4e-93 346.3 267 65.9
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 3.1e-93 345.9 302 60.3
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 3.1e-93 345.9 251 67.3
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.0e-93 345.5 235 71.9
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.3e-93 345.1 235 71.5
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.6e-92 342.8 280 62.9
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 4.5e-92 342.0 250 67.2
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.8e-92 341.7 235 71.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 7.6e-92 341.3 246 67.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.3e-91 340.5 252 66.7
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.7e-91 340.1 231 72.7
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 2.2e-91 339.7 249 67.5
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.2e-91 339.7 251 67.3
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 6.4e-91 338.2 227 72.2
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 6.4e-91 338.2 235 71.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 6.4e-91 338.2 241 69.3
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 6.4e-91 338.2 241 69.7
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 8.4e-91 337.8 249 68.3
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 8.4e-91 337.8 295 59.0
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.9e-90 336.7 295 58.6
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 2.4e-90 336.3 229 72.1
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.2e-90 335.9 225 73.3
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 4.2e-90 335.5 244 67.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 4.2e-90 335.5 291 59.1
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 5.4e-90 335.1 302 63.2
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 7.1e-90 334.7 246 65.9
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.6e-89 333.6 244 66.8
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 3.5e-89 332.4 248 67.7
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 4.6e-89 332.0 241 68.5
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 6.0e-89 331.6 269 65.1
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.0e-88 330.9 230 70.9
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.5e-87 326.2 248 66.5
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 7.4e-87 324.7 219 71.7
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 2.1e-86 323.2 246 64.2
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 3.7e-86 322.4 245 67.3
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.4e-85 320.5 224 68.3
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.4e-85 319.7 242 66.9
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.3e-83 313.9 279 58.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 7.1e-82 308.1 246 64.6
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.5e-81 305.8 247 62.8
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 7.9e-81 304.7 248 62.5
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.0e-80 304.3 248 64.1
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.1e-79 300.8 226 63.3
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.2e-76 290.8 232 60.8
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 4.5e-76 288.9 229 66.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 5.8e-76 288.5 221 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 9.3e-74 281.2 234 59.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.3e-72 277.3 204 69.1
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.8e-72 276.9 211 64.9
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.1e-66 257.7 244 53.7
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.5e-66 256.5 180 71.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-65 254.2 206 63.6
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 6.5e-59 231.9 246 50.0
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.5e-55 220.7 144 71.5
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 8.0e-49 198.4 149 69.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.3e-43 181.0 253 41.9
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 9.4e-42 174.9 216 43.5
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.8e-38 163.3 214 42.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.8e-35 152.9 88 83.0
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.0e-32 142.9 118 58.5
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 2.3e-27 127.1 137 52.6
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.7e-19 100.9 62 77.4
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 4.3e-18 96.3 89 56.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 2.8e-17 93.6 56 75.0
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.8e-17 93.6 83 55.4
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.0e-16 91.7 136 40.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 5.2e-16 89.4 60 70.0
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 6.8e-16 89.0 68 60.3
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.7e-14 84.3 63 63.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 5.4e-13 79.3 51 72.5
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 9.2e-13 78.6 74 58.1
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 9.2e-13 78.6 49 77.6
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 2.7e-12 77.0 170 35.3
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 3.5e-12 76.6 49 73.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 3.5e-12 76.6 63 57.1
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.7e-11 74.3 53 67.9
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 3.3e-10 70.1 85 44.7
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 3.7e-06 56.6 43 62.8


User provided reference genes

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