Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 5.1e-213 744.2 386 100.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.7e-208 729.2 408 94.4
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.3e-181 639.8 451 74.9
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 8.4e-176 620.5 456 72.1
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 7.9e-174 614.0 454 72.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 6.7e-173 610.9 657 54.8
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.2e-169 600.1 399 77.9
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.2e-166 590.1 456 71.1
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.6e-166 589.7 460 70.2
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.5e-164 583.2 460 68.7
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.5e-164 583.2 387 77.8
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.9e-164 582.8 460 69.6
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.2e-163 579.3 460 69.3
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.2e-163 579.3 460 69.3
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.1e-162 573.9 496 64.3
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 4.5e-161 571.6 450 69.6
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.9e-160 568.9 447 68.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.6e-158 563.1 484 65.3
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-154 550.4 445 67.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.6e-153 545.8 534 58.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.0e-152 543.9 539 57.3
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.7e-152 543.1 600 53.7
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 7.2e-143 511.1 407 68.6
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 8.0e-142 507.7 472 60.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.4e-141 506.9 573 53.4
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 9.1e-138 494.2 461 59.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 9.1e-138 494.2 598 50.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 8.5e-136 487.6 547 52.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-129 466.8 456 58.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-128 464.2 607 49.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-123 447.2 368 66.0
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 7.0e-122 441.4 439 57.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.1e-114 415.6 460 53.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.3e-103 379.0 338 62.7
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.8e-93 347.1 445 51.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.2e-92 344.4 222 78.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.2e-92 344.4 222 78.8
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 6.4e-91 338.6 204 82.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.2e-90 336.3 235 74.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-89 333.2 260 69.6
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-89 333.2 260 69.6
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-89 333.2 260 69.6
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 7.8e-89 331.6 260 75.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 7.8e-89 331.6 260 75.0
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.3e-88 330.1 201 82.6
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 5.1e-88 328.9 192 84.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 5.1e-88 328.9 192 84.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 5.1e-88 328.9 192 84.9
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 8.7e-88 328.2 260 68.5
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 9.6e-87 324.7 184 87.5
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.8e-86 323.2 198 81.8
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.7e-86 322.4 192 82.8
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 4.7e-86 322.4 192 82.8
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 4.7e-86 322.4 192 82.8
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.1e-85 321.2 247 70.4
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 5.2e-85 318.9 203 79.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.2e-84 317.8 201 80.1
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-84 317.0 175 87.4
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 3.4e-84 316.2 256 68.4
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.7e-83 313.9 183 85.2
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.0e-81 305.4 256 66.4
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 6.0e-81 305.4 239 69.5
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 3.9e-80 302.8 256 66.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 3.3e-79 299.7 256 65.6
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 5.3e-77 292.4 243 66.7
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 6.9e-77 292.0 260 64.2
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.2e-76 291.2 143 95.8
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-76 290.4 239 72.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.0e-76 290.4 239 72.8
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 3.4e-76 289.7 144 93.8
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 3.4e-76 289.7 144 93.8
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 5.8e-76 288.9 208 74.5
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.2e-75 287.0 256 66.8
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.9e-75 285.8 144 92.4
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-74 283.5 224 69.6
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 9.3e-74 281.6 206 70.4
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 9.3e-74 281.6 206 70.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 1.3e-72 277.7 150 94.0
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.8e-72 277.3 241 65.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 2.3e-72 276.9 176 79.5
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.9e-72 276.2 243 64.2
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 2.1e-70 270.4 255 61.2
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.7e-70 269.6 255 60.8
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 8.1e-70 268.5 243 63.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-69 268.1 563 37.1
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 3.1e-69 266.5 236 64.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.4e-68 263.1 188 71.8
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.5e-68 262.7 157 80.3
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 5.8e-68 262.3 245 62.0
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-62 243.8 150 84.7
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 4.8e-62 242.7 137 89.8
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.4e-61 240.4 164 74.4
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 5.3e-61 239.2 117 93.2
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 7.6e-60 235.3 256 55.5
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.2e-59 233.8 244 57.4
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.9e-58 230.7 144 80.6
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.5e-55 221.1 247 55.1
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 8.2e-54 215.3 150 77.3
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 5.3e-53 212.6 116 85.3
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.0e-52 210.7 113 83.2
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.4e-52 209.9 247 52.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 1.0e-51 208.4 193 60.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.3e-47 193.0 181 56.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.8e-46 190.3 139 72.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.2e-44 184.9 201 56.2
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-44 183.7 106 88.7
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 7.7e-44 182.2 107 86.9
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.3e-43 181.4 189 57.1
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.3e-43 181.4 204 54.4
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.3e-43 181.4 204 54.4
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-43 180.6 213 50.7
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.0e-40 171.8 106 82.1
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.2e-36 158.3 96 84.4
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.0e-35 155.2 133 61.7
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 2.2e-35 154.1 93 83.9
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 2.2e-35 154.1 111 71.2
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 2.5e-34 150.6 93 83.9
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 9.7e-31 138.7 76 90.8
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 9.7e-31 138.7 76 90.8
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 9.7e-31 138.7 76 90.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-30 136.0 132 58.3
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 8.2e-30 135.6 74 89.2
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.0e-29 132.5 91 75.8
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 7.7e-28 129.0 65 96.9
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-24 117.1 91 62.6
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.7e-22 110.2 59 91.5
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-21 107.5 112 53.6
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 7.7e-20 102.4 148 44.6
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 7.2e-18 95.9 66 69.7
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.6e-17 93.6 53 79.2
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-15 87.4 51 74.5
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 3.7e-14 83.6 177 38.4
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-13 81.6 63 65.1
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-13 81.6 91 51.6
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 3.1e-13 80.5 55 78.2
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 5.4e-13 79.7 48 83.3
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-12 77.4 67 62.7
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.5e-12 76.6 37 91.9
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.5e-12 76.6 46 78.3
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-11 75.1 53 64.2
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.3e-11 74.3 36 94.4
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 6.6e-11 72.8 37 91.9
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.5e-10 69.7 37 89.2
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.5e-10 69.7 37 89.2
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 7.2e-10 69.3 64 57.8
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.5e-10 68.9 39 87.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-09 67.4 37 86.5
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-09 67.0 37 86.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 4.7e-09 66.6 38 86.8
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.4e-08 65.1 37 81.1
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.4e-08 65.1 36 83.3
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.8e-08 64.7 38 81.6
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 6.8e-08 62.8 45 71.1
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.0e-07 61.2 32 87.5
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.3e-06 58.5 29 89.7
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 2.2e-06 57.8 30 93.3


User provided reference genes

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