Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00439g0001200 Lotus japonicus HOM05D008194 ORTHO05D010811 8.3e-28 126.3 64 100.0
LjContig00439g0021834 Lotus japonicus HOM05D008194 ORTHO05D010811 8.3e-28 126.3 64 100.0
Lsat_1_v5_gn_0_38140 Lactuca sativa HOM05D008194 ORTHO05D010811 5.4e-27 123.6 64 98.4
arahy.Tifrunner.gnm1.ann1.6G4HZT Arachis hypogaea HOM05D008194 ORTHO05D010811 7.0e-27 123.2 64 96.9
arahy.Tifrunner.gnm1.ann1.C43PR6 Arachis hypogaea HOM05D008194 ORTHO05D010811 7.0e-27 123.2 64 96.9
arahy.Tifrunner.gnm1.ann1.L892YY Arachis hypogaea HOM05D008194 ORTHO05D010811 7.0e-27 123.2 64 96.9
Hma1.2p1_0580F.1_g182760 Hydrangea macrophylla HOM05D008194 ORTHO05D010811 1.6e-26 122.1 64 96.9
Lalb_Chr10g0094521 Lupinus albus HOM05D008194 ORTHO05D010811 2.0e-26 121.7 64 95.3
Peaxi162Scf00040g01212 Petunia axillaris HOM05D008194 ORTHO05D010811 2.7e-26 121.3 64 96.9
RcHm_v2.0_MTg0498491 Rosa chinensis HOM05D008194 ORTHO05D010811 2.7e-26 121.3 64 96.9
CsaV3_UNG208120 Cucumis sativus L. HOM05D008194 ORTHO05D010811 6.6e-25 116.7 62 96.8
Peaxi162Scf00373g00823 Petunia axillaris HOM05D008194 ORTHO05D010811 6.6e-25 116.7 62 96.8
Potri.007G062542 Populus trichocarpa HOM05D008194 ORTHO05D010811 9.5e-24 112.8 64 93.8
CDE02G4414 Ceratophyllum demersum HOM05D006493 ORTHO05D009864 6.1e-23 110.2 61 93.4
Solyc00g244290.1 Solanum lycopersicum HOM05D008194 ORTHO05D010811 5.2e-22 107.1 57 96.5
Solyc00g500316.1 Solanum lycopersicum HOM05D008194 ORTHO05D010811 5.2e-22 107.1 57 96.5
Sopen00g013510 Solanum pennellii HOM05D008194 ORTHO05D010811 4.4e-21 104.0 57 94.7
Nn1g10151 Nelumbo nucifera HOM05D006493 ORTHO05D009864 2.2e-20 101.7 51 100.0
Glyma.01G136800 Glycine max HOM05D008194 ORTHO05D010811 2.9e-20 101.3 64 78.1
Nitab4.5_0000172g1570 Nicotiana tabacum HOM05D008194 ORTHO05D010811 1.1e-19 99.4 61 83.6
PGR069G0009 Punica granatum HOM05D006493 ORTHO05D009864 5.4e-19 97.1 51 96.1
Nitab4.5_0000172g1790 Nicotiana tabacum HOM05D008194 ORTHO05D010811 9.2e-19 96.3 56 87.5
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 9.2e-19 96.3 54 92.6
Nitab4.5_0000172g0130 Nicotiana tabacum HOM05D008194 ORTHO05D010811 3.5e-18 94.4 57 84.2
Aa31csc239G70 Aethionema arabicum HOM05D008194 ORTHO05D010811 1.0e-17 92.8 48 97.9
HanXRQChr07g0188931 Helianthus annuus HOM05D006493 ORTHO05D009864 5.0e-17 90.5 52 90.4
GSVIVG01007203001 Vitis vinifera HOM05D006493 ORTHO05D009864 3.3e-16 87.8 48 91.7
Thhalv10015951m.g Eutrema salsugineum HOM05D006493 ORTHO05D009864 7.3e-16 86.7 48 91.7
Peaxi162Scf00286g00017 Petunia axillaris HOM05D008194 ORTHO05D010811 6.2e-15 83.6 44 95.5
Nitab4.5_0008300g0050 Nicotiana tabacum HOM05D008194 ORTHO05D010811 1.0e-14 82.8 58 74.1
Mapoly0157s0028 Marchantia polymorpha HOM05D008466 ORTHO05D010817 1.8e-14 82.0 56 78.6
Nitab4.5_0008300g0040 Nicotiana tabacum HOM05D008194 ORTHO05D010811 2.2e-12 75.1 58 69.0
Nitab4.5_0000055g0320 Nicotiana tabacum HOM05D008194 ORTHO05D010811 1.1e-11 72.8 58 70.7
Nitab4.5_0001781g0110 Nicotiana tabacum HOM05D001560 ORTHO05D010811 3.9e-09 64.3 30 100.0
SHI34940 Sapria himalayana HOM05D008194 ORTHO05D010811 1.9e-08 62.0 62 59.7
HanXRQMTg0579071 Helianthus annuus HOM05D006493 ORTHO05D009864 1.4e-06 55.8 30 96.7
Nitab4.5_0000172g1630 Nicotiana tabacum HOM05D008194 ORTHO05D010811 8.9e-06 53.1 27 88.9


User provided reference genes

Program Settings