Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 2.6e-69 265.4 144 100.0
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-52 207.6 132 89.4
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-52 207.6 132 89.4
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 6.4e-52 207.6 132 89.4
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 1.1e-51 206.8 117 96.6
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 2.1e-39 166.0 123 79.7
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 8.1e-39 164.1 95 95.8
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 8.1e-39 164.1 95 95.8
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 2.3e-38 162.5 94 96.8
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 4.9e-36 154.8 112 81.2
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 5.4e-35 151.4 84 100.0
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 5.4e-35 151.4 84 100.0
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 5.4e-35 151.4 84 100.0
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 7.1e-35 151.0 84 98.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.7e-34 149.1 105 82.9
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 6.0e-34 147.9 85 97.6
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 6.0e-34 147.9 85 97.6
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 6.0e-34 147.9 85 97.6
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 6.0e-34 147.9 85 97.6
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 6.0e-34 147.9 85 97.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.8e-34 147.5 101 86.1
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.0e-33 147.1 84 97.6
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.0e-33 147.1 84 97.6
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 1.0e-33 147.1 84 97.6
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 1.0e-33 147.1 84 97.6
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 1.0e-33 147.1 84 97.6
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 1.7e-33 146.4 84 97.6
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 3.0e-33 145.6 84 96.4
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 6.6e-33 144.4 83 97.6
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 8.6e-33 144.1 84 95.2
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 8.6e-33 144.1 84 95.2
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.1e-32 143.7 100 85.0
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 9.5e-32 140.6 81 96.3
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 2.8e-31 139.0 95 85.3
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.1e-30 137.1 99 81.8
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 3.1e-30 135.6 83 92.8
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.2e-30 134.8 85 90.6
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 8.9e-30 134.0 109 75.2
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 2.6e-29 132.5 84 90.5
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 2.6e-29 132.5 84 90.5
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 7.6e-29 131.0 108 75.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.9e-28 128.3 94 79.8
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 4.9e-28 128.3 94 79.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.1e-27 127.1 110 70.0
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 4.1e-27 125.2 72 97.2
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 4.1e-27 125.2 84 88.1
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 4.1e-27 125.2 84 88.1
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 4.1e-27 125.2 84 88.1
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 7.1e-27 124.4 72 97.2
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.1e-26 122.9 70 98.6
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 5.1e-25 118.2 70 95.7
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 3.3e-24 115.5 84 81.0
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 4.7e-23 111.7 108 64.8
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.4e-22 110.2 110 62.7
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 9.0e-22 107.5 63 96.8
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 9.0e-22 107.5 62 96.8
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 1.5e-21 106.7 64 93.8
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.0e-21 106.3 65 92.3
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.9e-20 102.4 97 70.1
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.7e-18 95.9 90 70.0
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 1.5e-16 90.1 54 94.4
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 4.8e-15 85.1 76 68.4
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 5.3e-14 81.6 54 83.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 2.6e-13 79.3 69 72.5
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 2.6e-13 79.3 69 72.5
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 1.3e-12 77.0 45 95.6
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-11 73.6 54 77.8
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 7.1e-11 71.2 74 62.2
Oeu013685.1 Olea europaea HOM05D008204 ORTHO05D010378 3.9e-09 65.5 40 87.5
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 3.9e-09 65.5 75 56.0
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 8.7e-09 64.3 45 82.2
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 7.4e-08 61.2 70 60.0
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 7.4e-08 61.2 70 60.0
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 7.4e-08 61.2 45 80.0
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 1.3e-07 60.5 56 67.9
Nitab4.5_0000172g2070 Nicotiana tabacum HOM05D008204 ORTHO05D010378 8.1e-07 57.8 42 73.8
BraA02t07598Z Brassica rapa HOM05D008204 ORTHO05D010378 9.0e-06 54.3 38 76.3


User provided reference genes

Program Settings