Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00439g0010598 Lotus japonicus HOM05D008537 ORTHO05D010652 3.8e-171 604.7 303 100.0
LjContig00446g0012519 Lotus japonicus HOM05D008537 ORTHO05D010652 3.8e-171 604.7 303 100.0
Glyma.17G185800 Glycine max HOM05D008537 ORTHO05D010652 2.6e-148 528.9 322 87.0
Gorai.001G167800 Gossypium raimondii HOM05D008537 ORTHO05D010652 1.2e-97 360.5 300 68.3
Solyc00g500256.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 3.1e-80 302.8 216 76.4
BolSC28t60361H Brassica oleracea HOM05D008537 ORTHO05D010652 1.6e-60 237.3 234 61.1
BraSC177t45759Z Brassica rapa HOM05D008537 ORTHO05D010652 1.6e-60 237.3 234 61.1
arahy.Tifrunner.gnm1.ann1.DJ3Y2L Arachis hypogaea HOM05D008537 ORTHO05D010652 1.3e-59 234.2 256 57.4
BraSC48t46348Z Brassica rapa HOM05D008537 ORTHO05D010652 3.9e-59 232.6 235 60.9
arahy.Tifrunner.gnm1.ann1.PZS5LY Arachis hypogaea HOM05D008537 ORTHO05D010652 5.1e-59 232.3 256 56.6
CARHR287170 Cardamine hirsuta HOM05D008537 ORTHO05D010652 2.5e-58 229.9 234 59.4
TPR.G35334 Trifolium pratense HOM05D008537 ORTHO05D010652 4.0e-48 196.1 125 84.0
C01p34740 Brassica napus HOM05D008537 ORTHO05D010652 3.5e-44 183.0 216 52.3
SabraMtG0006100 Salix brachista HOM05D008537 ORTHO05D010652 1.3e-41 174.5 208 52.4
Lalb_Chr00c51g0413211 Lupinus albus HOM05D008537 ORTHO05D010652 1.1e-40 171.4 141 70.9
CDE02G3137 Ceratophyllum demersum HOM05D008537 ORTHO05D010652 1.8e-40 170.6 152 65.8
arahy.Tifrunner.gnm1.ann1.3B7DKZ Arachis hypogaea HOM05D008537 ORTHO05D010652 1.5e-39 167.5 152 59.9
SEGI_04170 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 1.5e-39 167.5 133 69.9
SEGI_18574 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 1.5e-39 167.5 133 69.9
TPR.G31018 Trifolium pratense HOM05D008537 ORTHO05D010652 1.7e-38 164.1 80 97.5
SEGI_08781 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 2.2e-38 163.7 133 68.4
CsaV3_UNG209980 Cucumis sativus L. HOM05D008537 ORTHO05D010652 1.3e-35 154.5 104 78.8
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.8e-35 154.1 114 74.6
Actinidia34884 Actinidia chinensis HOM05D008537 ORTHO05D010652 2.3e-35 153.7 114 72.8
Solyc00g500112.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 2.5e-34 150.2 101 79.2
RcHm_v2.0_MTg0499151 Rosa chinensis HOM05D008537 ORTHO05D010652 3.3e-34 149.8 100 80.0
Solyc00g500111.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 3.3e-34 149.8 75 94.7
Ah.10g028020 Amaranthus hybridus HOM05D008537 ORTHO05D010652 1.3e-33 147.9 101 78.2
arahy.Tifrunner.gnm1.ann1.75TDV4 Arachis hypogaea HOM05D008537 ORTHO05D010652 1.1e-32 144.8 101 77.2
Ca_27707_v3 Cicer arietinum L. HOM05D008537 ORTHO05D010652 1.4e-32 144.4 101 76.2
Aa31csc464G100 Aethionema arabicum HOM05D008537 ORTHO05D010652 1.2e-28 131.3 98 71.4
EL10Ac5g12180 Beta vulgaris HOM05D008537 ORTHO05D010652 1.0e-22 111.7 81 72.8
Solyc11g030915.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 1.0e-22 111.7 136 50.0
arahy.Tifrunner.gnm1.ann1.MAXI5J Arachis hypogaea HOM05D004909 ORTHO05D009316 7.9e-20 102.1 65 76.9
ATR1126G003 Amborella trichopoda HOM05D008537 ORTHO05D010652 4.5e-15 86.3 47 91.5
SHI26665 Sapria himalayana HOM05D008537 ORTHO05D010652 6.5e-14 82.4 80 60.0
SHI04797 Sapria himalayana HOM05D008537 ORTHO05D010652 7.4e-10 68.9 109 41.3
Solyc10g045723.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 1.1e-08 65.1 36 80.6
Mapoly3683s0001 Marchantia polymorpha HOM05D008537 ORTHO05D010652 1.8e-08 64.3 39 76.9
arahy.Tifrunner.gnm1.ann1.HG9IL5 Arachis hypogaea HOM05D020378 ORTHO05D010652 2.6e-07 60.5 34 85.3
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 5.9e-07 59.3 140 34.3
Nn117s43416 Nelumbo nucifera HOM05D047131 ORTHO05D016420 5.0e-06 56.2 61 52.5
Nn1g10111 Nelumbo nucifera HOM05D047131 ORTHO05D016420 5.0e-06 56.2 61 52.5
SGA_v2.0_scaffold420G51364 Striga asiatica HOM05D008537 ORTHO05D010652 6.5e-06 55.8 30 86.7
Peaxi162Scf00622g00018 Petunia axillaris HOM05D008537 ORTHO05D010652 8.5e-06 55.5 34 82.4


User provided reference genes

Program Settings