Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 5.2e-110 401.0 191 100.0
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 5.2e-110 401.0 191 100.0
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 8.3e-108 393.7 191 98.4
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 8.3e-108 393.7 191 98.4
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 8.3e-108 393.7 191 98.4
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 1.8e-107 392.5 191 97.9
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 1.8e-107 392.5 191 97.9
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 1.8e-107 392.5 191 97.9
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 4.1e-107 391.3 191 97.4
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 4.1e-107 391.3 191 97.4
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.4e-107 391.0 191 97.4
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 7.0e-107 390.6 191 97.4
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 9.2e-107 390.2 191 96.9
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.2e-106 389.8 191 96.9
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.6e-106 389.4 191 96.9
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 2.0e-106 389.0 191 96.9
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 4.6e-106 387.9 191 96.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 6.6e-105 384.0 191 96.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 1.5e-104 382.9 191 96.3
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 1.5e-104 382.9 191 96.3
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 3.3e-104 381.7 191 95.8
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 7.3e-104 380.6 191 94.8
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.0e-102 376.7 191 94.8
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.0e-102 376.7 191 94.8
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.4e-102 376.3 189 95.2
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.3e-102 375.6 184 96.7
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.0e-102 374.8 188 94.1
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 2.0e-101 372.5 191 94.2
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.6e-101 372.1 188 93.1
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 7.5e-101 370.5 191 93.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.4e-99 364.4 188 92.6
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-98 363.2 191 91.6
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 3.5e-98 361.7 191 91.1
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.5e-96 355.5 179 94.4
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.2e-95 353.2 189 91.0
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 2.1e-95 352.4 186 90.3
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 2.1e-95 352.4 186 90.3
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 8.1e-95 350.5 188 87.8
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 1.4e-94 349.7 170 98.2
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 1.4e-94 349.7 170 98.2
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 3.1e-94 348.6 170 98.2
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 2.6e-93 345.5 170 97.1
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.7e-92 342.8 170 97.1
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.2e-92 342.4 170 97.1
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 8.3e-92 340.5 170 95.9
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.9e-91 339.3 167 97.0
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 3.5e-90 335.1 170 95.3
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 4.6e-90 334.7 168 95.8
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 6.0e-90 334.3 166 96.4
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.0e-90 334.3 170 95.3
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.0e-90 334.3 170 95.3
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 3.0e-89 332.0 168 95.2
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 6.6e-89 330.9 170 94.1
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 4.3e-88 328.2 165 95.2
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 4.7e-87 324.7 170 91.8
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.1e-86 323.6 185 84.3
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 5.2e-86 321.2 177 88.1
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 5.8e-85 317.8 161 93.2
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 5.8e-85 317.8 191 83.2
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-84 316.2 163 92.6
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 2.2e-84 315.8 170 90.6
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.1e-83 313.5 166 91.0
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 7.8e-82 307.4 168 87.5
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-81 304.7 179 83.2
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 3.3e-80 302.0 191 77.5
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 1.2e-79 300.1 177 81.9
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-79 297.7 165 86.7
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 1.8e-78 296.2 170 85.3
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-78 295.8 164 86.6
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-78 294.3 175 83.4
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-77 291.2 164 86.6
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.8e-76 288.5 141 97.9
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 3.8e-76 288.5 141 97.9
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 8.4e-76 287.3 167 85.6
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 1.1e-75 287.0 153 91.5
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-74 282.3 188 72.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-71 271.6 138 94.9
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 1.4e-70 270.0 135 95.6
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-69 264.2 135 93.3
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-67 258.1 138 90.6
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 5.4e-67 258.1 138 90.6
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-66 256.1 142 86.6
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-66 254.2 132 91.7
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-66 254.2 155 81.3
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-64 249.2 148 82.4
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-64 248.8 131 90.1
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 5.6e-64 248.1 170 77.1
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 8.1e-63 244.2 124 94.4
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 5.8e-61 238.0 192 66.7
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-61 237.7 136 86.0
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 1.9e-59 233.0 192 66.1
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 2.4e-59 232.6 136 84.6
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-57 225.3 138 83.3
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 5.6e-56 221.5 127 85.0
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-55 218.4 134 82.1
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 8.1e-55 217.6 114 92.1
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-54 216.5 114 90.4
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 2.6e-53 212.6 100 99.0
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 7.6e-53 211.1 185 62.2
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.0e-52 210.7 148 73.0
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 1.7e-52 209.9 99 99.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.8e-52 208.8 109 91.7
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 1.1e-51 207.2 97 99.0
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 1.9e-51 206.5 96 100.0
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 1.9e-51 206.5 99 98.0
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 6.0e-50 201.4 138 74.6
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.3e-49 200.3 102 93.1
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 3.0e-49 199.1 109 89.0
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-48 196.4 115 85.2
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 9.6e-48 194.1 153 59.5
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 4.1e-46 188.7 184 51.6
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 9.0e-46 187.6 100 89.0
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 2.6e-45 186.0 99 88.9
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.8e-44 182.2 103 85.4
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-43 178.7 94 89.4
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.2e-43 177.9 96 87.5
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.1e-42 176.4 143 64.3
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 6.1e-42 174.9 79 100.0
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.9e-41 172.2 106 80.2
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 2.5e-40 169.5 89 91.0
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 3.1e-38 162.5 131 66.4
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-37 159.1 87 85.1
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-37 159.1 87 85.1
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 1.0e-36 157.5 74 98.6
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.0e-36 157.5 74 98.6
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-36 157.5 132 62.9
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-36 156.0 171 51.5
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 6.5e-36 154.8 74 97.3
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 6.5e-36 154.8 74 97.3
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 6.5e-36 154.8 74 97.3
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 6.5e-36 154.8 74 97.3
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 8.5e-36 154.5 74 94.6
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.2e-34 150.6 150 56.7
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 3.6e-34 149.1 71 95.8
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-33 147.5 81 85.2
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 1.4e-33 147.1 175 45.1
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 2.3e-33 146.4 86 81.4
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 6.7e-33 144.8 72 93.1
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-32 142.1 74 89.2
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 9.7e-32 141.0 74 89.2
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 2.2e-31 139.8 68 92.6
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-31 139.8 74 89.2
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-31 139.4 74 87.8
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-31 139.0 74 87.8
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 8.2e-31 137.9 74 86.5
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 2.4e-30 136.3 72 88.9
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-30 135.2 70 90.0
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-30 135.2 74 86.5
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-30 134.4 135 58.5
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 9.1e-30 134.4 135 58.5
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-29 133.3 72 86.1
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 7.7e-29 131.3 92 71.7
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-28 131.0 74 85.1
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-28 129.8 74 85.1
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-28 128.3 71 85.9
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-27 125.6 74 82.4
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 3.0e-25 119.4 57 96.5
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 7.4e-24 114.8 64 84.4
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.3e-23 114.0 69 81.2
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 5.3e-22 108.6 59 91.5
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 2.6e-21 106.3 61 88.5
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 2.9e-20 102.8 51 94.1
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.5e-19 99.8 72 69.4
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 3.0e-17 92.8 69 68.1
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 5.2e-17 92.0 58 77.6
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 4.4e-16 89.0 111 48.6
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 9.7e-16 87.8 44 93.2
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 3.5e-13 79.3 45 80.0
SHI38481 Sapria himalayana HOM05D001560 ORTHO05D004675 4.5e-13 79.0 181 34.3
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-11 73.6 50 72.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 2.3e-09 66.6 35 85.7
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 6.8e-09 65.1 30 96.7
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 8.8e-09 64.7 30 93.3
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 9.8e-08 61.2 34 82.4
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 2.2e-07 60.1 43 62.8
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-07 58.5 33 84.8


User provided reference genes

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