Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.7e-106 389.4 206 100.0
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.7e-106 389.4 206 100.0
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.7e-106 389.4 206 100.0
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 7.8e-104 380.6 204 98.0
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 7.8e-104 380.6 204 98.0
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 7.8e-104 380.6 204 98.0
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 7.8e-104 380.6 204 98.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.7e-103 379.4 204 97.5
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 2.5e-102 375.6 204 97.1
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 3.3e-102 375.2 204 97.1
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 9.6e-102 373.6 200 98.5
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.6e-101 371.7 200 98.0
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-100 367.9 203 96.1
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-100 367.9 203 96.1
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-100 367.9 203 96.1
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.2e-99 366.7 205 96.1
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-99 365.9 202 95.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-99 365.9 202 95.5
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 2.6e-99 365.5 204 95.1
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 9.9e-99 363.6 205 95.6
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 9.9e-99 363.6 204 94.6
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 9.9e-99 363.6 204 94.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 6.4e-98 360.9 198 96.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 8.4e-98 360.5 203 94.1
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 8.4e-98 360.5 203 94.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 1.9e-97 359.4 206 92.7
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 1.9e-97 359.4 206 92.7
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 5.4e-97 357.8 206 92.2
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.2e-96 356.7 203 93.1
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 2.7e-96 355.5 206 92.7
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 8.7e-95 350.5 202 93.1
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 8.7e-95 350.5 202 93.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 6.4e-90 334.3 195 91.3
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.4e-89 332.4 203 86.7
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 3.2e-89 332.0 183 95.6
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.1e-88 329.3 203 86.2
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.7e-88 328.9 203 85.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-85 320.1 203 84.2
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 6.2e-85 317.8 198 88.9
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.1e-84 317.0 204 84.3
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-84 315.8 187 90.4
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 3.4e-83 312.0 176 94.3
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 2.2e-82 309.3 200 85.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.8e-77 292.4 203 80.8
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 3.7e-77 292.0 157 95.5
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.1e-71 271.6 203 76.8
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 4.1e-68 261.9 148 92.6
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.5e-67 258.5 174 82.2
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 1.0e-66 257.3 154 88.3
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 2.5e-65 252.7 140 94.3
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 8.2e-61 237.7 130 95.4
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 5.3e-60 235.0 124 99.2
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 1.5e-59 233.4 130 95.4
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-57 226.1 149 79.9
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-50 204.1 117 91.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.0e-50 204.1 193 62.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 5.0e-50 201.8 197 64.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.5e-46 190.3 103 98.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 2.0e-43 179.9 115 85.2
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.3e-42 177.2 100 91.0
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.0e-38 163.3 89 98.9
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 2.6e-38 162.9 88 100.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-36 157.5 184 57.1
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 1.4e-36 157.1 95 92.6
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 7.2e-33 144.8 82 91.5
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 2.4e-28 129.8 71 95.8
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.4e-28 128.6 175 52.6
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 2.9e-26 122.9 93 73.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.1e-24 116.7 131 58.8
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.9e-21 106.3 64 79.7
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.1e-20 104.4 57 84.2
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 7.0e-20 101.7 61 85.2
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 3.5e-19 99.4 71 84.5
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 1.2e-16 90.9 57 87.7
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.3e-15 86.7 63 77.8
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 2.3e-15 86.7 49 91.8
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.2e-14 84.3 89 62.9
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 2.9e-13 79.7 44 95.5
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 6.0e-11 72.0 37 94.6
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 5.0e-10 68.9 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 5.0e-10 68.9 37 91.9
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.1e-08 63.5 40 85.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.1e-07 61.2 34 94.1
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.1e-07 61.2 34 94.1
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 1.1e-07 61.2 34 94.1
CDE02G0177 Ceratophyllum demersum HOM05D003517 ORTHO05D130237 9.9e-06 54.7 118 30.5


User provided reference genes

Program Settings