Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00430g0004045 Lotus japonicus HOM05D000147 ORTHO05D025190 9.3e-210 733.4 402 100.0
Lj3g0002274 Lotus japonicus HOM05D000147 ORTHO05D025190 7.9e-201 703.7 388 99.5
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 1.3e-163 580.1 337 91.7
LjContig00460g0026987 Lotus japonicus HOM05D000147 ORTHO05D025190 2.7e-84 316.6 388 55.9
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 7.4e-74 282.0 281 59.8
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 1.8e-72 277.3 300 59.3
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 2.0e-71 273.9 285 58.9
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 2.0e-71 273.9 238 62.6
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 4.5e-71 272.7 302 55.6
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 5.9e-71 272.3 304 54.9
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 3.8e-70 269.6 281 57.7
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 2.5e-69 266.9 318 53.5
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 5.7e-66 255.8 282 55.7
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 8.2e-65 251.9 239 58.6
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 1.1e-64 251.5 283 55.8
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 9.1e-64 248.4 274 56.2
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 2.0e-63 247.3 300 53.0
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 4.5e-55 219.5 282 48.9
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 6.5e-54 215.7 267 47.9
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 8.5e-54 215.3 256 51.6
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 1.2e-52 211.5 245 51.8
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 2.1e-52 210.7 304 43.4
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 6.1e-52 209.1 279 48.7
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 8.0e-52 208.8 234 50.9
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 1.0e-51 208.4 278 48.2
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 1.0e-51 208.4 296 43.6
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 4.0e-51 206.5 304 43.4
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 4.0e-51 206.5 282 48.6
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 6.7e-51 205.7 231 51.1
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 8.8e-51 205.3 209 55.5
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 1.2e-50 204.9 251 47.4
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 2.0e-50 204.1 296 43.2
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 3.3e-50 203.4 251 47.8
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 5.7e-50 202.6 267 46.4
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 5.7e-50 202.6 282 46.5
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 5.7e-50 202.6 242 50.4
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 7.5e-50 202.2 269 46.8
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 9.7e-50 201.8 317 41.0
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 4.8e-49 199.5 245 48.6
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 4.8e-49 199.5 252 48.0
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 8.2e-49 198.7 262 45.4
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 8.2e-49 198.7 291 46.0
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 7.0e-48 195.7 280 46.1
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 7.0e-48 195.7 303 44.2
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 9.1e-48 195.3 302 43.4
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 1.6e-47 194.5 306 43.1
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 2.0e-47 194.1 244 47.1
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 2.7e-47 193.7 212 54.7
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 3.5e-47 193.4 279 45.5
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 3.5e-47 193.4 272 45.2
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 1.0e-46 191.8 265 44.5
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.7e-46 191.0 304 43.1
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 2.9e-46 190.3 278 45.3
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 3.8e-46 189.9 292 41.4
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 5.0e-46 189.5 288 42.7
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 7.2e-45 185.7 253 44.3
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 7.2e-45 185.7 291 42.3
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 2.1e-44 184.1 277 41.5
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 2.1e-44 184.1 315 41.3
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 1.8e-43 181.0 264 42.4
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.8e-43 181.0 299 41.1
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 1.8e-43 181.0 242 47.9
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 2.3e-43 180.6 274 45.3
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 2.3e-43 180.6 253 42.3
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 4.0e-43 179.9 182 54.9
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 5.2e-43 179.5 305 40.7
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 1.5e-42 177.9 217 46.5
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 2.0e-42 177.6 251 44.6
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 2.0e-42 177.6 306 41.8
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 9.8e-42 175.3 261 42.5
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 2.2e-41 174.1 212 48.6
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 2.8e-41 173.7 233 46.4
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 8.3e-41 172.2 308 39.6
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 1.1e-40 171.8 190 50.5
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.1e-40 171.8 234 47.0
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 1.8e-40 171.0 302 41.1
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 2.4e-40 170.6 243 45.7
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 9.1e-40 168.7 282 41.5
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 2.7e-39 167.2 230 46.1
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 2.7e-39 167.2 253 43.1
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 2.7e-39 167.2 246 41.9
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 3.5e-39 166.8 214 47.2
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 4.5e-39 166.4 328 39.6
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 5.9e-39 166.0 318 37.7
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 1.7e-38 164.5 296 39.2
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 3.8e-38 163.3 156 57.1
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 1.1e-37 161.8 334 36.8
Haze_11747 Corylus avellana HOM05D000147 ORTHO05D025190 1.5e-37 161.4 152 59.2
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 2.1e-36 157.5 273 41.4
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 4.7e-36 156.4 358 34.1
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 8.0e-36 155.6 231 45.9
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 1.4e-35 154.8 261 39.5
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 6.8e-35 152.5 295 41.4
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.0e-34 151.0 273 38.8
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 3.4e-34 150.2 249 41.0
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 3.4e-34 150.2 307 40.1
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 3.4e-34 150.2 300 36.3
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 5.7e-34 149.4 257 42.8
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 2.2e-33 147.5 286 38.8
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 4.9e-33 146.4 270 40.0
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 4.9e-33 146.4 233 40.3
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 1.1e-32 145.2 233 41.2
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 3.1e-32 143.7 291 37.8
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 5.4e-32 142.9 295 36.9
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 9.2e-32 142.1 295 36.6
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 1.2e-31 141.7 295 36.6
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 1.2e-31 141.7 295 36.6
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 2.0e-31 141.0 283 37.1
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 2.0e-31 141.0 288 37.8
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 2.0e-31 141.0 299 36.8
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 2.0e-31 141.0 240 40.0
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.7e-31 140.6 293 38.2
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 3.5e-31 140.2 280 38.6
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 5.0e-30 136.3 210 41.4
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 8.6e-30 135.6 277 37.9
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 2.5e-29 134.0 244 38.5
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 3.3e-29 133.7 244 39.8
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 5.6e-29 132.9 314 34.4
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 1.2e-28 131.7 259 37.1
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 3.6e-28 130.2 136 52.2
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 5.2e-27 126.3 157 44.6
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.5e-26 124.8 321 34.0
Sabra07G0057300 Salix brachista HOM05D000147 ORTHO05D005311 1.5e-26 124.8 164 47.0
Lsat_1_v5_gn_5_32401 Lactuca sativa HOM05D000147 ORTHO05D005311 8.3e-25 119.0 158 43.7
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 1.4e-24 118.2 163 46.6
Lsat_1_v5_gn_3_18480 Lactuca sativa HOM05D000147 ORTHO05D005311 4.6e-23 113.2 199 38.7
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.7e-22 111.3 127 44.1
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 1.7e-22 111.3 149 41.6
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 1.9e-21 107.8 156 38.5
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 6.2e-20 102.8 235 36.6
Pp3c5_8900 Physcomitrium patens HOM05D000147 ORTHO05D005311 6.8e-19 99.4 276 31.9
Mapoly0092s0039 Marchantia polymorpha HOM05D000147 ORTHO05D005311 7.5e-10 69.3 315 28.9
Lsat_1_v5_gn_8_102480 Lactuca sativa HOM05D001455 ORTHO05D005311 1.4e-08 65.1 91 41.8
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 3.2e-08 63.9 51 58.8


User provided reference genes

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