Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00408g0002790 Lotus japonicus HOM05D003793 ORTHO05D004471 1.5e-92 342.8 166 100.0
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 1.3e-29 133.7 114 59.6
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 3.0e-29 132.5 112 60.7
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 3.9e-29 132.1 112 60.7
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 8.7e-29 131.0 112 59.8
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 1.9e-28 129.8 112 58.9
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 2.5e-28 129.4 114 56.1
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 2.5e-28 129.4 113 57.5
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 3.3e-28 129.0 113 58.4
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 5.7e-28 128.3 114 57.0
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 5.7e-28 128.3 114 57.0
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 56.1
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 56.1
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 56.1
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 56.1
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 56.1
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.3e-27 127.1 114 55.3
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.6e-27 126.7 114 56.1
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 2.1e-27 126.3 114 54.4
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 2.1e-27 126.3 114 54.4
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 2.1e-27 126.3 114 55.3
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 2.1e-27 126.3 114 55.3
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 2.8e-27 125.9 114 54.4
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 2.8e-27 125.9 112 56.2
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 2.8e-27 125.9 98 64.3
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 6.2e-27 124.8 114 53.5
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 6.2e-27 124.8 114 54.4
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 6.2e-27 124.8 114 54.4
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 6.2e-27 124.8 113 55.8
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 8.2e-27 124.4 114 56.1
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 8.2e-27 124.4 112 57.1
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 8.2e-27 124.4 112 57.1
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 8.2e-27 124.4 114 55.3
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.1e-26 124.0 114 55.3
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 1.1e-26 124.0 114 52.6
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 1.1e-26 124.0 114 53.5
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.1e-26 124.0 112 57.1
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 1.1e-26 124.0 114 55.3
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 1.4e-26 123.6 114 55.3
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.4e-26 123.6 114 53.5
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.8e-26 123.2 112 55.4
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 1.8e-26 123.2 112 57.1
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-26 123.2 114 54.4
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-26 123.2 114 54.4
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-26 123.2 114 54.4
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 1.8e-26 123.2 112 57.1
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.1e-26 122.5 114 52.6
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 4.0e-26 122.1 112 54.5
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 4.0e-26 122.1 112 55.4
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.0e-26 122.1 114 54.4
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 4.0e-26 122.1 112 54.5
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 4.0e-26 122.1 114 55.3
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 5.3e-26 121.7 147 44.9
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 5.3e-26 121.7 114 54.4
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 5.3e-26 121.7 112 55.4
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 6.9e-26 121.3 112 55.4
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 9.0e-26 120.9 112 55.4
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 9.0e-26 120.9 114 55.3
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 9.0e-26 120.9 113 54.0
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 1.2e-25 120.6 114 52.6
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 1.2e-25 120.6 114 53.5
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.2e-25 120.6 112 56.2
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 1.2e-25 120.6 114 52.6
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.5e-25 120.2 112 54.5
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.5e-25 120.2 112 54.5
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 1.5e-25 120.2 112 55.4
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 1.5e-25 120.2 112 53.6
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 2.0e-25 119.8 114 52.6
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 2.0e-25 119.8 114 52.6
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 56.2
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 2.6e-25 119.4 119 52.1
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 2.6e-25 119.4 112 53.6
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 2.6e-25 119.4 114 52.6
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 2.6e-25 119.4 114 52.6
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 3.4e-25 119.0 113 54.0
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 3.4e-25 119.0 113 54.0
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 3.4e-25 119.0 112 55.4
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 3.4e-25 119.0 112 52.7
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 3.4e-25 119.0 112 52.7
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 3.4e-25 119.0 112 52.7
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 3.4e-25 119.0 112 54.5
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 4.5e-25 118.6 119 52.1
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 4.5e-25 118.6 111 55.0
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 4.5e-25 118.6 112 52.7
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 5.8e-25 118.2 114 51.8
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 5.8e-25 118.2 127 53.5
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 5.8e-25 118.2 148 45.9
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 5.8e-25 118.2 112 53.6
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 7.6e-25 117.9 112 55.4
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 7.6e-25 117.9 112 53.6
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.3e-24 117.1 112 52.7
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.3e-24 117.1 112 52.7
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 1.3e-24 117.1 112 53.6
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 1.3e-24 117.1 112 52.7
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 1.7e-24 116.7 114 50.9
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 1.7e-24 116.7 114 51.8
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.2e-24 116.3 107 55.1
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 2.2e-24 116.3 112 52.7
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 2.9e-24 115.9 113 53.1
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 2.9e-24 115.9 113 53.1
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 2.9e-24 115.9 113 53.1
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 3.8e-24 115.5 113 53.1
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 3.8e-24 115.5 113 53.1
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 3.8e-24 115.5 113 53.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 3.8e-24 115.5 114 50.9
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 3.8e-24 115.5 113 53.1
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 3.8e-24 115.5 113 53.1
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 5.0e-24 115.2 113 53.1
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 5.0e-24 115.2 111 52.3
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 5.0e-24 115.2 113 53.1
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 5.0e-24 115.2 112 52.7
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 6.5e-24 114.8 113 53.1
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 6.5e-24 114.8 113 53.1
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 6.5e-24 114.8 114 50.0
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 8.4e-24 114.4 114 50.9
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.4e-23 113.6 112 52.7
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 1.9e-23 113.2 113 52.2
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 2.5e-23 112.8 114 50.0
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 7.1e-23 111.3 113 51.3
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-22 110.5 112 50.0
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.6e-22 110.2 112 50.9
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 2.1e-22 109.8 113 50.4
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 4.6e-22 108.6 119 49.6
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 7.9e-22 107.8 113 48.7
Mapoly0013s0102 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.0e-21 107.5 110 50.9
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.0e-21 107.5 113 48.7
Mapoly0008s0048 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.3e-21 107.1 112 49.1
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 1.8e-21 106.7 113 47.8
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.3e-21 106.3 119 47.9
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 2.3e-21 106.3 112 50.9
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 2.3e-21 106.3 114 48.2
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 5.1e-21 105.1 112 45.5
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.1e-20 104.0 90 56.7
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 1.9e-20 103.2 90 54.4
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.5e-20 102.8 119 47.1
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.3e-20 102.4 113 46.0
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 2.2e-19 99.8 113 43.4
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.4e-18 96.3 113 49.6
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.5e-17 93.6 112 42.0
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.7e-16 90.1 112 43.8
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 3.8e-16 89.0 114 41.2
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 9.4e-15 84.3 75 56.0
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 1.2e-14 84.0 113 42.5
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 4.6e-14 82.0 113 41.6
Cc06_g18710 Coffea canephora HOM05D003793 ORTHO05D004471 1.0e-13 80.9 111 42.3
arahy.Tifrunner.gnm1.ann1.DIJP1R Arachis hypogaea HOM05D003793 ORTHO05D004471 2.3e-13 79.7 52 73.1
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 3.0e-13 79.3 75 50.7
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.1e-12 77.4 75 54.7
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 2.5e-12 76.3 114 40.4
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 7.4e-12 74.7 75 48.0
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 9.7e-12 74.3 89 46.1
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 1.3e-11 73.9 89 44.9
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 9.1e-10 67.8 89 33.7
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 9.1e-10 67.8 97 33.0
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.0e-09 66.6 89 32.6
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 1.9e-07 60.1 75 45.3
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.9e-07 60.1 97 32.0


User provided reference genes

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