Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00389g0017607 Lotus japonicus HOM05D007369 ORTHO05D009369 1.5e-259 899.0 466 100.0
TPR.G37368 Trifolium pratense HOM05D007369 ORTHO05D009369 1.9e-113 413.7 354 65.3
Ca_17638_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 1.3e-106 391.0 412 55.8
Lalb_Chr18g0055751 Lupinus albus HOM05D007369 ORTHO05D009369 5.5e-105 385.6 360 60.6
VMungo0540G1702 Vigna mungo HOM05D007369 ORTHO05D009369 5.5e-105 385.6 365 61.6
Glyma.13G214800 Glycine max HOM05D007369 ORTHO05D009369 1.4e-103 380.9 361 63.2
Phvul.006G161000 Phaseolus vulgaris HOM05D007369 ORTHO05D009369 2.0e-102 377.1 359 61.0
Medtr8g093650 Medicago truncatula HOM05D007369 ORTHO05D009369 7.0e-100 368.6 389 56.3
arahy.Tifrunner.gnm1.ann1.ED76E0 Arachis hypogaea HOM05D007369 ORTHO05D009369 4.7e-96 355.9 361 60.1
Glyma.15G098300 Glycine max HOM05D007369 ORTHO05D009369 2.0e-94 350.5 349 59.9
Psat1g187040 Pisum sativum HOM05D007369 ORTHO05D009369 1.3e-93 347.8 413 50.8
arahy.Tifrunner.gnm1.ann1.IR05CW Arachis hypogaea HOM05D007369 ORTHO05D009369 8.3e-93 345.1 379 57.0
Ca_00577_v3 Cicer arietinum L. HOM05D007369 ORTHO05D009369 6.8e-71 272.3 267 59.9
QL06p007318 Quercus lobata HOM05D007369 ORTHO05D009369 1.4e-63 248.1 366 45.4
Cfa015498 Carpinus fangiana HOM05D007369 ORTHO05D009369 3.0e-58 230.3 362 43.4
Dinv38329 Davidia involucrata HOM05D007369 ORTHO05D009369 4.7e-56 223.0 368 42.1
Thecc.04G277200 Theobroma cacao HOM05D007369 ORTHO05D009369 8.1e-56 222.2 362 42.5
Gorai.006G075300 Gossypium raimondii HOM05D007369 ORTHO05D009369 4.1e-52 209.9 363 41.3
Ciclev10005057m.g Citrus clementina HOM05D007369 ORTHO05D009369 1.2e-51 208.4 359 41.5
Haze_01056 Corylus avellana HOM05D007369 ORTHO05D009369 1.7e-50 204.5 342 41.8
TAR636G2558 Trochodendron aralioides HOM05D007369 ORTHO05D009369 1.7e-50 204.5 400 40.2
Gohir.A09G061800 Gossypium hirsutum HOM05D007369 ORTHO05D009369 2.8e-48 197.2 339 41.3
Gohir.D09G060700 Gossypium hirsutum HOM05D007369 ORTHO05D009369 2.8e-48 197.2 345 41.2
Nn3g21294 Nelumbo nucifera HOM05D007369 ORTHO05D009369 6.2e-48 196.1 386 39.4
CiPaw.02G086900 Carya illinoinensis HOM05D007369 ORTHO05D009369 2.4e-47 194.1 359 40.1
Actinidia40222 Actinidia chinensis HOM05D007369 ORTHO05D009369 4.0e-47 193.4 367 38.7
Duzib052G0382 Durio zibethinus HOM05D007369 ORTHO05D009369 4.0e-47 193.4 352 38.9
COL.COLO4_13933 Corchorus olitorius HOM05D007369 ORTHO05D009369 5.2e-47 193.0 418 36.4
MD13G1174200 Malus domestica HOM05D007369 ORTHO05D009369 2.0e-46 191.0 362 40.3
Potri.008G195300 Populus trichocarpa HOM05D007369 ORTHO05D009369 4.4e-46 189.9 362 38.7
CSS0015973 Camellia sinensis var. sinensis HOM05D007369 ORTHO05D009369 9.9e-46 188.7 363 39.1
Manes.15G017400 Manihot esculenta HOM05D007369 ORTHO05D009369 8.4e-45 185.7 352 40.6
Hma1.2p1_0078F.1_g040800 Hydrangea macrophylla HOM05D007369 ORTHO05D009369 3.2e-44 183.7 354 37.9
Prupe.1G142600 Prunus persica HOM05D007369 ORTHO05D009369 4.2e-44 183.3 367 38.4
Dinv44429 Davidia involucrata HOM05D007369 ORTHO05D009369 1.5e-41 174.9 359 37.0
Duzib151G0340 Durio zibethinus HOM05D007369 ORTHO05D009369 2.5e-41 174.1 357 35.0
Rhsim04G0215900 Rhododendron simsii HOM05D007369 ORTHO05D009369 4.4e-38 163.3 372 34.7
RcHm_v2.0_Chr4g0420931 Rosa chinensis HOM05D007369 ORTHO05D009369 4.4e-38 163.3 363 35.8
Manes.03G190800 Manihot esculenta HOM05D007369 ORTHO05D009369 1.4e-36 158.3 289 38.8
GSVIVG01017812001 Vitis vinifera HOM05D007369 ORTHO05D009369 2.1e-35 154.5 353 36.5
FAN12G1425 Fragaria x ananassa HOM05D007369 ORTHO05D009369 3.5e-35 153.7 364 35.2
FAN12G3176 Fragaria x ananassa HOM05D007369 ORTHO05D009369 3.5e-35 153.7 364 35.2
CANSAT78G0356 Cannabis sativa HOM05D007369 ORTHO05D009369 1.0e-34 152.1 364 34.6
ATR0706G035 Amborella trichopoda HOM05D007369 ORTHO05D009369 1.3e-34 151.8 418 33.5
FAN17G0929 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.7e-34 151.4 366 35.0
FvH4_4g17160 Fragaria vesca HOM05D007369 ORTHO05D009369 2.3e-34 151.0 364 34.9
FAN07G2486 Fragaria x ananassa HOM05D007369 ORTHO05D009369 7.4e-33 146.0 363 34.7
Nn4g26033 Nelumbo nucifera HOM05D007369 ORTHO05D009369 9.0e-31 139.0 379 32.7
Eucgr.B01264 Eucalyptus grandis HOM05D007369 ORTHO05D009369 2.6e-30 137.5 416 32.7
Oeu044796.2 Olea europaea HOM05D007369 ORTHO05D009369 5.8e-30 136.3 369 31.2
Actinidia23432 Actinidia chinensis HOM05D007369 ORTHO05D009369 9.9e-30 135.6 364 34.1
Aqoxy2G03087 Aquilegia oxysepala HOM05D007369 ORTHO05D009369 4.2e-28 130.2 388 33.2
MBI19_g37517_MAGBIO Magnolia biondii HOM05D007369 ORTHO05D009369 7.1e-28 129.4 387 33.6
Cc03_g02400 Coffea canephora HOM05D007369 ORTHO05D009369 2.3e-26 124.4 345 34.2
FAN22G0049 Fragaria x ananassa HOM05D007369 ORTHO05D009369 3.3e-25 120.6 358 31.0
Atru.chr4.2750 Acer truncatum HOM05D007369 ORTHO05D009369 5.6e-25 119.8 176 44.3
Lalb_Chr20g0118161 Lupinus albus HOM05D007369 ORTHO05D009369 4.8e-24 116.7 212 40.6
Sc13g0003630 Simmondsia chinensis HOM05D007369 ORTHO05D009369 6.9e-23 112.8 340 33.2
MD16G1175500 Malus domestica HOM05D007369 ORTHO05D009369 3.4e-22 110.5 254 35.4
Oeu062882.1 Olea europaea HOM05D007369 ORTHO05D009369 1.3e-21 108.6 267 33.7
DCAR_002440 Daucus carota HOM05D007369 ORTHO05D009369 3.8e-21 107.1 244 36.5
SalBow2G2600 Salvia bowleyana HOM05D007369 ORTHO05D009369 6.5e-21 106.3 362 29.8
TAR365G0645 Trochodendron aralioides HOM05D007369 ORTHO05D009369 9.3e-20 102.4 274 33.6
Sopen01g029630 Solanum pennellii HOM05D007369 ORTHO05D009369 1.0e-18 99.0 363 27.3
VMungo0647G1723 Vigna mungo HOM05D007369 ORTHO05D009369 1.0e-18 99.0 80 63.8
Potri.010G031250 Populus trichocarpa HOM05D007369 ORTHO05D009369 1.3e-18 98.6 144 45.1
Sed0026345 Sechium edule HOM05D007369 ORTHO05D009369 6.7e-18 96.3 307 31.9
SGA_v2.0_scaffold57G20253 Striga asiatica HOM05D007369 ORTHO05D009369 1.5e-17 95.1 354 28.0
CsaV3_3G014100 Cucumis sativus L. HOM05D007369 ORTHO05D009369 3.3e-17 94.0 309 32.7
Solyc01g067700.3 Solanum lycopersicum HOM05D007369 ORTHO05D009369 1.3e-16 92.0 251 30.3
CAN.G223.8 Capsicum annuum HOM05D007369 ORTHO05D009369 2.8e-16 90.9 372 26.3
ClCG05G005770 Citrullus lanatus HOM05D007369 ORTHO05D009369 6.3e-16 89.7 308 30.2
TWI73G1273 Tripterygium wilfordii HOM05D007369 ORTHO05D009369 1.4e-15 88.6 163 39.9
Peaxi162Scf00386g00219 Petunia axillaris HOM05D007369 ORTHO05D009369 2.4e-15 87.8 281 28.1
vmacro08206 Vaccinium macrocarpon HOM05D007369 ORTHO05D009369 2.4e-15 87.8 377 26.3
Atru.chr4.2749 Acer truncatum HOM05D007369 ORTHO05D009369 4.1e-15 87.0 138 42.8
Nitab4.5_0003067g0040 Nicotiana tabacum HOM05D007369 ORTHO05D009369 5.3e-15 86.7 344 27.0
Nitab4.5_0000197g0120 Nicotiana tabacum HOM05D007369 ORTHO05D009369 1.5e-14 85.1 332 26.5
Mapoly0126s0031 Marchantia polymorpha HOM05D007369 ORTHO05D009369 3.2e-12 77.4 274 30.3
SEGI_26846 Sequoiadendron giganteum HOM05D007369 ORTHO05D009369 3.6e-11 73.9 171 34.5
Sabra08G0148500 Salix brachista HOM05D007369 ORTHO05D009369 4.6e-11 73.6 95 46.3
Migut.G00214 Erythranthe guttata HOM05D007369 ORTHO05D009369 3.9e-10 70.5 105 41.9
ECA240G2128 Erigeron canadensis HOM05D007369 ORTHO05D009369 1.9e-09 68.2 245 29.4
MELO3C031713.2 Cucumis melo HOM05D007369 ORTHO05D009369 9.7e-09 65.9 286 30.8
THA.LOC104820236 Tarenaya hassleriana HOM05D007369 ORTHO05D009369 2.2e-08 64.7 318 28.0
FAN17G3125 Fragaria x ananassa HOM05D007369 ORTHO05D009369 1.2e-06 58.9 55 50.9
HanXRQChr03g0080111 Helianthus annuus HOM05D007369 ORTHO05D009369 1.5e-06 58.5 228 28.9


User provided reference genes

Program Settings