Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-214 749.6 362 100.0
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.3e-146 523.5 295 84.1
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.7e-146 523.1 374 70.6
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 3.6e-144 515.4 306 80.4
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 8.0e-144 514.2 385 68.6
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.5e-142 510.0 347 72.3
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 4.4e-142 508.4 316 79.1
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 9.8e-142 507.3 318 76.4
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 5.0e-138 495.0 373 68.4
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 8.0e-136 487.6 382 66.2
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.8e-135 486.5 290 79.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 8.3e-133 477.6 304 76.0
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.1e-132 477.2 283 79.2
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-132 477.2 318 72.0
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.0e-131 473.0 334 70.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 5.9e-131 471.5 290 77.2
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.3e-130 469.5 308 70.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.8e-130 468.8 292 77.4
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.3e-129 464.5 283 77.0
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 9.5e-129 464.2 327 68.8
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.1e-128 463.0 287 76.3
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.1e-128 463.0 290 76.2
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.8e-128 462.6 306 72.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.6e-128 462.2 290 77.2
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 3.0e-127 459.1 330 68.8
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 5.2e-127 458.4 331 68.3
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 5.2e-127 458.4 326 68.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 6.8e-127 458.0 290 74.5
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 6.8e-127 458.0 335 66.9
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-126 457.2 307 70.7
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 2.0e-126 456.4 324 68.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 3.4e-126 455.7 324 67.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.7e-125 453.4 331 68.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.2e-125 453.0 293 73.0
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.2e-125 453.0 323 67.8
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.2e-125 453.0 334 67.4
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.7e-125 452.2 339 65.8
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 4.9e-125 451.8 339 65.8
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.2e-124 449.1 296 72.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.1e-124 448.7 290 75.5
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 7.0e-124 448.0 326 67.8
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 7.0e-124 448.0 296 71.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 9.2e-124 447.6 301 72.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.2e-123 447.2 286 74.5
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.0e-123 446.4 309 69.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 2.0e-123 446.4 291 74.2
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.7e-123 446.0 333 67.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 3.5e-123 445.7 350 63.4
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 4.6e-123 445.3 277 74.7
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 5.9e-123 444.9 320 67.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 7.8e-123 444.5 300 71.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.3e-122 443.7 293 70.6
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.3e-122 443.7 325 68.6
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.9e-122 442.2 276 75.7
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.5e-121 440.3 328 66.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.5e-121 440.3 277 74.7
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.5e-121 439.5 262 76.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 9.5e-121 437.6 307 69.1
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.8e-120 436.0 336 65.5
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.0e-119 434.1 277 73.6
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 6.8e-119 431.4 337 63.2
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 6.8e-119 431.4 332 63.3
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.9e-119 431.0 340 65.0
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.6e-118 429.5 284 73.6
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 3.4e-118 429.1 371 60.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.4e-118 428.7 293 70.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.9e-117 425.2 297 72.1
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.4e-117 424.9 309 69.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.1e-116 424.1 289 69.6
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.1e-116 424.1 297 70.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 3.2e-116 422.5 331 62.2
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 3.2e-116 422.5 267 73.4
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.1e-116 422.2 341 63.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 2.0e-115 419.9 303 68.0
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.5e-115 419.1 277 68.6
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.0e-114 416.0 330 63.3
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 3.0e-114 416.0 334 62.9
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.9e-114 415.6 328 65.9
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.6e-114 414.8 333 61.9
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 4.3e-113 412.1 276 71.7
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.1e-112 409.8 330 60.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 2.8e-112 409.5 292 66.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 3.6e-112 409.1 280 70.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 4.7e-112 408.7 304 66.8
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 6.2e-112 408.3 280 68.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 6.2e-112 408.3 312 62.8
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 6.2e-112 408.3 279 68.5
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.8e-111 406.8 261 72.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 3.1e-111 406.0 313 62.6
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.5e-110 403.7 313 62.6
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 4.4e-110 402.1 320 62.5
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 5.8e-110 401.7 268 73.9
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.8e-110 401.7 262 69.8
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.9e-109 399.4 286 67.1
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.1e-108 395.6 343 59.5
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.2e-107 394.0 303 63.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.7e-107 392.9 301 62.8
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.7e-106 390.2 268 66.8
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 1.5e-105 387.1 343 56.3
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 4.3e-105 385.6 316 60.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 9.5e-105 384.4 319 63.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 2.1e-104 383.3 299 62.9
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.4e-102 375.9 290 63.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 5.8e-102 375.2 313 59.7
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 9.9e-102 374.4 226 75.7
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 9.9e-102 374.4 306 60.1
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.2e-101 373.2 313 59.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 6.4e-101 371.7 227 75.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.1e-100 370.9 293 63.5
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.4e-100 369.8 366 53.8
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.4e-100 368.6 321 57.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 9.2e-100 367.9 318 57.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 4.6e-99 365.5 333 58.6
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.5e-97 359.8 318 57.5
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-96 355.5 336 54.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.7e-96 355.5 336 54.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 4.0e-95 352.4 361 52.6
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 5.2e-95 352.1 363 53.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 5.8e-94 348.6 299 60.5
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 7.1e-92 341.7 288 59.4
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 9.3e-92 341.3 286 59.1
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 5.1e-90 335.5 262 58.4
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 6.6e-90 335.1 273 54.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.3e-89 332.8 283 54.8
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 5.3e-87 325.5 323 52.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-83 313.9 282 55.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.5e-81 307.4 300 53.0
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.6e-81 304.7 300 52.3
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.4e-79 300.8 343 47.5
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 7.6e-78 295.0 260 53.5
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.2e-77 293.5 182 74.2
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-77 293.5 306 50.7
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.9e-77 292.4 220 63.6
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.6e-75 287.3 262 51.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.9e-73 280.4 311 50.2
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.3e-71 272.3 298 47.0
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-70 271.2 265 52.1
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-69 268.1 227 59.9
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.2e-68 263.1 178 70.8
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 5.5e-68 262.3 200 62.0
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.3e-66 256.9 179 71.5
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.9e-66 256.1 164 74.4
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.1e-65 254.6 202 63.9
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.9e-65 253.8 327 43.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.9e-65 253.8 179 70.9
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 3.3e-65 253.1 165 71.5
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.1e-63 246.5 485 34.2
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.7e-61 240.7 222 58.6
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-61 240.4 299 45.2
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.1e-60 238.0 182 65.4
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-60 237.7 182 64.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-57 228.0 171 63.7
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 9.7e-57 224.9 162 64.2
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 2.8e-56 223.4 259 41.3
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 2.6e-54 216.9 270 43.0
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 2.3e-50 203.8 345 33.6
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.4e-47 194.5 117 71.8
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.9e-45 186.8 166 57.8
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 6.1e-43 179.1 119 67.2
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 8.0e-43 178.7 134 62.7
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.4e-42 177.9 104 78.8
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.7e-42 175.6 113 69.0
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.2e-38 164.9 106 69.8
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.5e-38 163.3 127 59.1
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.5e-37 159.1 104 70.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.5e-33 147.9 82 82.9
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-32 144.1 186 43.5
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.4e-31 141.4 138 53.6
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.1e-31 140.2 97 64.9
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.1e-31 140.2 97 64.9
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.0e-26 123.2 90 60.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 6.3e-24 115.9 77 67.5
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.1e-19 100.9 60 68.3
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.7e-19 99.8 72 59.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.5e-17 94.7 60 73.3
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-15 87.8 53 73.6
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.5e-12 78.2 67 58.2
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 7.3e-12 75.9 55 61.8
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 4.7e-11 73.2 53 62.3
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 7.5e-09 65.9 37 83.8


User provided reference genes

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