Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 2326.6 1206 100.0
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1838.5 1207 79.5
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1805.8 1207 78.8
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1719.5 1199 75.4
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1700.6 1194 75.3
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1694.1 1183 75.1
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1677.5 1214 74.3
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1668.3 1221 73.1
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1668.3 1194 74.2
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1667.1 1131 76.8
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1647.1 1219 72.8
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1629.8 1206 72.5
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1629.8 1206 72.5
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1623.6 1173 73.8
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1515.7 1229 67.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1488.4 1231 66.5
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1481.8 1254 64.4
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1218 65.3
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1461.8 1233 65.2
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1446.4 1224 64.1
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1446.0 1214 65.2
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1224 64.0
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1441.0 1257 63.6
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1439.5 1215 65.3
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1433.7 1213 64.5
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1432.2 1232 63.8
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1222 64.2
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1428.3 1188 65.0
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1427.9 1211 65.2
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1232 63.6
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1419.8 1232 63.3
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1158 65.5
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1154 65.7
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1412.5 1221 62.6
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1411.7 1170 65.2
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1411.4 1222 63.5
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1406.3 1212 63.8
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1405.2 1156 65.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1404.4 1222 63.6
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1399.0 1195 63.0
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1398.6 1217 62.9
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1394.4 1239 62.8
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1392.1 1221 62.1
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1391.3 1222 62.8
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1385.2 1250 62.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1382.1 1224 61.8
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1378.6 1222 63.3
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1378.2 1242 61.2
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1374.0 1229 61.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1370.1 1234 62.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1362.4 1242 60.7
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1222 61.3
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1357.0 1217 61.5
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1242 60.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1352.8 1242 60.4
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1352.0 1225 60.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1344.7 1162 62.7
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1343.2 1219 61.0
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1338.6 1177 61.0
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1338.2 1221 61.1
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1336.6 1204 61.3
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1333.2 1247 60.6
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1221 60.4
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1156 62.6
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1329.3 1222 60.1
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1323.5 1219 60.0
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1322.0 1263 59.1
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1322.0 1263 59.1
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1321.6 1218 60.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1321.6 1203 61.1
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1321.2 1192 62.8
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1320.8 1249 59.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1320.8 1217 60.0
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1319.7 1263 59.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1319.3 1224 60.2
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1303.9 1425 53.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1299.6 1222 59.6
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1292.3 1203 58.9
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1289.6 1228 58.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1287.7 1233 58.9
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1285.8 1358 55.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1285.4 1224 57.8
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1281.9 1206 58.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1272.3 1166 60.6
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1267.7 1211 59.2
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1262.3 1177 59.0
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1260.4 1147 60.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1252.3 1137 60.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1242.3 1240 56.4
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1241.1 1212 57.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1234.6 1237 56.1
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1207.2 1162 59.1
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1165.2 743 79.4
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1123.2 1034 59.2
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1116.7 1202 53.8
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1113.2 842 70.3
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1094.3 1077 56.3
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1083.6 1138 53.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.6e-311 1072.8 1190 53.3
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 1.2e-310 1070.1 1076 55.0
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.1e-309 1067.0 1198 52.8
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 5.1e-296 1021.5 982 57.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 2.3e-288 996.1 1191 50.5
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 4.7e-281 971.8 1179 48.9
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 7.0e-269 931.4 1244 47.3
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 8.8e-264 914.4 1148 47.4
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.6e-255 886.3 767 63.4
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.3e-248 863.2 679 65.4
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 7.0e-237 825.1 957 50.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-228 797.7 680 63.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.2e-221 773.1 1243 41.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 4.9e-214 749.2 1251 39.3
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.5e-210 736.9 646 60.5
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.1e-200 704.9 627 60.6
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 7.1e-197 692.2 679 57.3
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.7e-195 685.6 1159 39.7
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 4.2e-189 666.4 701 54.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 7.9e-188 662.1 611 61.2
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 5.7e-186 656.0 626 56.9
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 7.2e-181 639.0 1148 37.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.6e-170 604.0 607 56.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.2e-153 547.7 531 56.5
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.5e-143 513.5 455 60.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.3e-142 511.1 454 61.5
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 2.7e-135 487.6 347 75.5
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.7e-134 485.0 423 62.4
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 9.8e-130 469.2 1504 28.1
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 4.6e-111 407.1 384 59.6
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 4.3e-109 400.6 403 58.8
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 2.3e-94 351.7 427 45.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.3e-89 335.9 479 45.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.5e-85 321.6 345 53.0
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.8e-83 315.5 271 66.4
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.6e-77 293.9 319 52.7
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.3e-73 282.7 379 46.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-71 275.8 356 46.9
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 2.1e-63 248.8 224 56.2
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.1e-59 236.5 238 55.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 9.4e-56 223.4 201 58.7
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 1.5e-53 216.1 130 83.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 9.7e-45 186.8 181 55.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.0e-43 180.6 216 48.1
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-42 177.9 235 46.4
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-42 177.9 214 48.1
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.0e-41 174.5 210 47.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.2e-39 169.9 159 56.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 4.8e-36 157.9 178 53.9
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.5e-34 151.8 134 54.5
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-34 151.4 175 52.0
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-33 149.1 130 55.4
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 3.2e-32 145.2 130 54.6
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 9.4e-32 143.7 127 54.3
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-31 141.7 133 63.2
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.1e-24 120.2 106 54.7
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-23 116.3 106 53.8
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-23 114.8 111 48.6
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-19 103.2 222 36.9
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 7.0e-19 100.9 64 75.0
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.9e-17 95.1 61 73.8
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 5.6e-16 91.3 97 59.8
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 7.3e-16 90.9 57 82.5
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 9.5e-16 90.5 185 37.3
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.1e-15 87.8 98 58.2
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 4.4e-13 81.6 194 30.9
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 9.8e-13 80.5 90 56.7
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 7.0e-11 74.3 121 34.7
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-08 66.2 72 48.6
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.5e-08 65.9 158 37.3
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.3e-08 65.5 60 58.3


User provided reference genes

Program Settings