Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 0.0e+00 1261.1 709 100.0
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 7.7e-268 927.2 718 71.7
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.3e-259 899.0 728 70.1
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 2.6e-255 885.6 735 68.6
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.4e-253 879.8 730 67.7
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 7.3e-250 867.5 680 70.7
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.8e-248 862.8 721 68.2
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.6e-247 859.0 719 68.3
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 1.2e-239 833.6 730 64.9
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 5.2e-232 808.1 704 64.8
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.1e-219 765.0 718 61.0
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 5.0e-174 615.5 694 53.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 4.2e-173 612.5 521 67.6
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 2.7e-172 609.8 704 53.3
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 1.5e-170 604.0 641 55.5
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 1.5e-170 604.0 712 51.8
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.3e-170 602.8 641 55.4
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.4e-170 602.4 679 52.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 7.4e-170 601.7 641 55.5
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 9.7e-170 601.3 681 51.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.1e-168 597.8 727 51.3
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.6e-167 593.2 641 55.1
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 7.7e-167 591.7 691 52.2
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.2e-164 584.3 652 54.1
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.2e-164 584.3 652 54.1
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 2.1e-164 583.6 662 52.9
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.0e-163 579.7 649 53.0
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.2e-163 578.9 665 52.5
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 5.2e-163 578.9 644 54.3
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 1.2e-162 577.8 727 48.8
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.5e-162 577.4 649 52.7
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.0e-162 577.0 689 51.5
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 4.4e-162 575.9 738 49.9
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 4.4e-162 575.9 648 53.4
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.4e-162 575.9 648 52.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 5.7e-162 575.5 638 53.4
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.3e-161 574.3 728 50.4
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.8e-161 573.2 682 51.5
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 6.3e-161 572.0 691 51.5
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.5e-159 565.8 681 51.4
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 3.6e-156 556.2 702 49.1
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 6.8e-155 552.0 652 51.7
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 8.8e-155 551.6 713 48.8
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.5e-154 550.8 700 50.6
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 2.0e-154 550.4 685 49.3
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 5.9e-151 538.9 680 49.9
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 9.5e-149 531.6 669 50.1
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 5.2e-147 525.8 663 50.5
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 2.8e-145 520.0 713 46.7
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.4e-144 517.7 665 50.5
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 3.5e-143 513.1 645 49.6
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.0e-142 511.5 628 49.2
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 6.6e-142 508.8 629 49.0
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.9e-141 507.3 652 49.2
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 9.5e-141 505.0 632 49.1
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 2.1e-140 503.8 645 50.4
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.7e-140 502.7 643 47.9
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 6.1e-140 502.3 684 47.7
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.1e-139 500.0 660 47.4
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 6.8e-139 498.8 557 55.5
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.3e-137 491.9 666 46.8
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 1.4e-136 491.1 684 45.9
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 1.4e-136 491.1 703 45.2
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 6.6e-134 482.3 642 48.1
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 8.6e-134 481.9 640 45.8
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.5e-133 480.3 616 48.9
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 7.3e-133 478.8 697 43.8
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.2e-132 478.0 651 48.5
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 4.7e-132 476.1 688 44.6
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.3e-131 473.8 688 45.1
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 5.2e-131 472.6 678 46.2
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.3e-129 468.0 669 46.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.7e-127 460.3 639 47.9
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.5e-125 454.5 754 40.7
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 9.5e-125 451.8 690 43.6
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 5.8e-122 442.6 651 43.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 1.0e-118 431.8 541 50.8
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 3.0e-118 430.3 696 43.0
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.5e-117 427.9 690 42.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 1.6e-116 424.5 595 46.2
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 4.7e-116 422.9 636 44.3
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 2.0e-114 417.5 607 44.8
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 3.4e-114 416.8 606 44.6
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 5.8e-114 416.0 562 47.2
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 7.6e-114 415.6 659 43.1
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.3e-110 404.1 652 43.6
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 8.7e-110 402.1 615 43.4
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.1e-108 397.5 685 41.5
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 3.4e-106 390.2 651 43.2
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 5.8e-106 389.4 667 41.8
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 5.4e-104 382.9 648 42.9
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.2e-103 381.7 610 42.5
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 7.9e-103 379.0 638 41.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.3e-102 378.3 637 42.7
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.7e-97 361.3 696 40.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 2.7e-95 354.0 665 39.4
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.8e-94 351.3 693 37.5
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 8.7e-94 349.0 577 41.6
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 5.6e-93 346.3 669 39.8
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.4e-91 341.7 675 39.7
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.4e-91 341.7 675 39.7
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 9.0e-91 339.0 527 43.6
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 3.4e-90 337.0 719 36.3
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 4.9e-89 333.2 634 39.1
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 8.4e-89 332.4 454 45.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.7e-87 327.4 616 38.1
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.8e-86 324.7 430 47.2
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 8.7e-86 322.4 246 63.8
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 6.2e-84 316.2 620 37.6
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 7.6e-82 309.3 732 35.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-80 305.4 557 40.4
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.2e-79 302.0 571 39.1
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 1.7e-73 281.6 446 45.7
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 4.2e-72 276.9 189 70.4
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.2e-65 254.6 262 54.2
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 4.7e-63 246.9 511 38.6
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.0e-57 229.2 221 52.5
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 8.5e-57 226.1 610 35.4
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 5.3e-51 206.8 117 83.8
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.5e-50 204.1 236 44.5
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.6e-47 195.3 249 41.8
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.4e-46 192.2 125 76.0
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 9.8e-45 186.0 115 74.8
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.8e-43 181.8 204 44.6
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 1.5e-40 172.2 157 64.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 8.8e-38 162.9 135 60.0
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 5.4e-35 153.7 459 30.7
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 1.7e-33 148.7 161 50.3
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.5e-32 144.8 130 60.0
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 3.3e-32 144.4 240 43.3
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.6e-31 142.1 211 43.1
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 8.9e-30 136.3 123 53.7
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 2.9e-28 131.3 244 41.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 5.9e-26 123.6 87 72.4
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.6e-21 108.2 74 62.2
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.2e-18 99.4 106 42.5
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 7.8e-18 96.7 162 43.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 3.9e-17 94.4 90 55.6
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 4.7e-15 87.4 73 53.4
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 7.5e-13 80.1 108 51.9
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.7e-12 79.0 68 57.4
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.9e-12 77.4 72 50.0
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 6.6e-09 67.0 50 66.0
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.9e-08 65.5 65 52.3
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.6e-07 62.4 42 64.3
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 4.7e-07 60.8 55 47.3
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 8.1e-07 60.1 44 61.4
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 5.2e-06 57.4 176 26.7
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.8e-06 57.0 55 52.7


User provided reference genes

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