Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.7e-263 910.6 449 100.0
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.1e-171 607.1 461 66.6
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.8e-169 597.8 437 68.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.7e-167 592.0 459 67.3
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.2e-165 587.0 451 66.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 4.6e-165 585.1 450 66.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 5.1e-164 581.6 451 66.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.7e-162 575.1 457 62.4
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.7e-159 566.6 453 63.8
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.1e-153 547.4 460 60.7
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.1e-153 545.8 457 61.1
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.6e-152 542.7 458 61.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 5.8e-152 541.6 458 59.8
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.3e-151 540.4 464 61.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 8.4e-151 537.7 456 61.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.9e-150 536.6 458 60.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.4e-150 536.2 458 60.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 9.2e-150 534.3 454 61.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.7e-141 506.1 472 55.1
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.0e-140 504.2 478 55.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.7e-140 503.4 468 53.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.3e-140 503.1 468 54.1
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.3e-139 498.8 475 55.2
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.1e-138 496.5 475 53.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 8.1e-138 494.6 470 54.5
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.4e-137 493.0 473 53.3
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 5.3e-137 491.9 476 53.2
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 6.9e-137 491.5 473 53.7
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.0e-137 491.1 463 52.9
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 9.0e-137 491.1 429 59.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.2e-136 490.7 471 54.1
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-135 486.1 472 52.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 6.4e-135 485.0 470 52.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 6.4e-135 485.0 471 52.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.4e-135 484.6 471 52.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.1e-134 484.2 475 52.2
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.4e-134 483.8 475 52.6
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-134 483.4 454 56.4
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.2e-134 482.3 475 52.4
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 4.2e-134 482.3 472 53.0
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.4e-134 481.9 475 52.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.1e-134 481.5 475 52.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-133 480.7 475 52.4
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.1e-133 479.9 479 51.6
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 6.0e-133 478.4 476 50.8
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.8e-132 476.9 471 51.2
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.8e-132 476.9 477 49.7
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.3e-132 476.5 466 52.8
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.3e-132 476.5 447 53.5
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.0e-132 476.1 466 51.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.0e-132 476.1 471 52.9
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 6.7e-132 474.9 474 52.5
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 6.7e-132 474.9 476 50.2
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.7e-132 474.9 449 53.5
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.7e-132 474.6 468 52.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.7e-132 474.6 468 52.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-131 473.8 473 52.0
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-131 473.8 468 52.6
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.5e-131 473.0 474 52.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.4e-131 471.5 473 51.6
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.6e-130 470.3 445 54.4
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.8e-130 469.5 444 55.4
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.8e-130 469.5 463 51.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.7e-130 469.2 471 51.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.2e-130 468.4 472 50.0
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 8.1e-130 468.0 464 52.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-129 467.6 444 55.2
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.4e-129 467.2 447 54.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.4e-129 466.5 450 55.6
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 3.1e-129 466.1 444 54.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.0e-129 465.7 449 54.8
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.4e-128 462.6 475 50.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 3.4e-128 462.6 450 54.7
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 4.5e-128 462.2 444 54.5
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 5.8e-128 461.8 476 50.2
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.9e-128 461.1 448 54.5
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-127 460.7 445 54.2
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.9e-127 459.5 480 49.8
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-127 459.1 444 53.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 4.9e-127 458.8 447 53.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 6.4e-127 458.4 467 50.5
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.1e-126 457.6 448 54.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.4e-126 457.2 472 50.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-126 456.8 444 53.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-126 456.1 445 53.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.2e-126 456.1 448 53.3
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.2e-126 455.7 455 53.0
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 5.5e-126 455.3 445 53.3
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 5.5e-126 455.3 470 51.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 9.3e-126 454.5 474 49.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-125 454.1 447 52.8
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-125 454.1 445 52.8
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.2e-125 454.1 474 50.4
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.5e-125 452.6 468 50.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.0e-124 451.1 445 51.9
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.0e-124 451.1 476 49.2
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-124 450.7 448 53.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-124 450.3 445 53.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-124 450.3 445 53.0
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 6.7e-124 448.4 445 52.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 6.7e-124 448.4 445 52.6
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 6.7e-124 448.4 448 53.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.5e-123 447.2 471 48.8
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.9e-123 446.8 407 55.3
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.7e-122 442.6 420 53.6
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.7e-122 442.6 466 49.4
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 6.2e-122 441.8 447 52.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-121 440.3 445 51.5
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.1e-121 439.5 445 51.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.0e-121 439.1 393 56.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 5.3e-121 438.7 456 49.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 6.9e-121 438.3 446 51.3
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.0e-121 438.0 454 49.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.0e-121 438.0 467 48.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.5e-120 437.2 456 51.5
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 3.4e-120 436.0 471 50.7
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 4.5e-120 435.6 479 47.4
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 7.6e-120 434.9 449 50.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 7.6e-120 434.9 449 50.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.0e-119 434.5 401 54.4
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.3e-119 434.1 449 50.6
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.7e-119 433.7 454 49.3
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-118 431.0 449 50.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.2e-117 427.6 459 48.4
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.7e-117 426.4 464 47.2
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.8e-116 423.7 472 47.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.8e-116 423.7 468 48.1
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 3.9e-116 422.5 467 46.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.7e-116 421.8 457 47.9
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.5e-115 419.9 452 48.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 5.7e-115 418.7 460 49.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.2e-114 414.8 474 46.6
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.4e-113 413.3 470 46.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-111 407.1 418 49.0
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.6e-109 399.4 472 43.9
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.8e-108 397.1 474 44.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.8e-108 394.8 462 43.7
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.1e-105 386.0 379 49.6
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.4e-104 382.9 401 48.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.3e-95 354.4 452 44.7
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.5e-94 349.0 455 43.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.2e-94 348.6 411 42.8
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 8.0e-93 345.1 450 44.2
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 9.7e-91 338.2 452 40.9
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 7.7e-88 328.6 451 45.5
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.3e-87 327.8 424 40.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 3.8e-87 326.2 447 42.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 3.8e-87 326.2 290 56.2
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 3.8e-87 326.2 290 56.2
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-86 323.9 459 38.6
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.0e-84 318.2 457 36.1
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.2e-84 315.8 427 38.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.0e-83 313.9 427 38.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.5e-78 297.0 422 37.2
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.8e-59 232.6 330 36.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.2e-58 230.7 325 42.2
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 4.9e-58 229.6 204 58.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-57 226.9 199 56.3
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.1e-57 226.5 199 56.3
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-49 201.8 161 63.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.3e-47 194.1 203 47.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 7.3e-46 189.1 211 48.3
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 7.8e-40 169.1 158 51.3
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.3e-31 141.0 169 42.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.3e-28 129.8 321 30.8
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.1e-23 113.2 283 31.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.8e-20 104.8 87 59.8
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 4.9e-18 96.7 84 57.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.7e-16 90.9 86 55.8
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 4.8e-13 80.1 175 36.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 3.9e-07 60.5 43 65.1
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 7.4e-06 56.2 105 38.1


User provided reference genes

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