Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 5.6e-45 184.5 139 100.0
LjContig00357g0002258 Lotus japonicus HOM05D016758 ORTHO05D005763 7.6e-26 120.9 139 69.1
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 4.3e-21 105.1 142 62.0
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 3.5e-15 85.5 142 52.8
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 3.5e-15 85.5 142 52.8
Medtr5g084540 Medicago truncatula HOM05D009657 ORTHO05D005763 1.3e-14 83.6 58 82.8
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 2.3e-14 82.8 133 54.1
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 8.7e-14 80.9 138 58.7
Medtr5g084570 Medicago truncatula HOM05D009657 ORTHO05D005763 2.5e-13 79.3 55 85.5
Glyma.14G051900 Glycine max HOM05D016758 ORTHO05D005763 2.8e-12 75.9 141 65.2
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 2.8e-12 75.9 139 59.7
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 3.1e-11 72.4 169 54.4
TPR.G17687 Trifolium pratense HOM05D009657 ORTHO05D005763 6.9e-11 71.2 55 80.0
Phvul.008G216600 Phaseolus vulgaris HOM05D016758 ORTHO05D005763 2.0e-10 69.7 147 60.5
arahy.Tifrunner.gnm1.ann1.4VA7BX Arachis hypogaea HOM05D064469 ORTHO05D005763 3.8e-09 65.5 127 44.9
arahy.Tifrunner.gnm1.ann1.V70XEM Arachis hypogaea HOM05D064469 ORTHO05D005763 3.8e-09 65.5 127 49.6
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 4.9e-09 65.1 137 56.9
Glyma.14G052000 Glycine max HOM05D016758 ORTHO05D005763 4.9e-09 65.1 151 55.0
Medtr5g084460 Medicago truncatula HOM05D009657 ORTHO05D005763 1.1e-08 63.9 58 72.4
Medtr5g084530 Medicago truncatula HOM05D009657 ORTHO05D005763 1.1e-08 63.9 54 74.1
Psat2g027000 Pisum sativum HOM05D009657 ORTHO05D005763 1.1e-08 63.9 58 67.2
Ca_06042_v3 Cicer arietinum L. HOM05D009657 ORTHO05D005763 1.4e-08 63.5 58 67.2
Psat2g026840 Pisum sativum HOM05D009657 ORTHO05D005763 1.9e-08 63.2 58 67.2
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 3.2e-08 62.4 147 57.8
Medtr5g084470 Medicago truncatula HOM05D009657 ORTHO05D005763 3.2e-08 62.4 54 72.2
Psat2g028440 Pisum sativum HOM05D009657 ORTHO05D005763 3.2e-08 62.4 58 65.5
Psat2g026880 Pisum sativum HOM05D009657 ORTHO05D005763 4.2e-08 62.0 58 65.5
Psat2g027040 Pisum sativum HOM05D009657 ORTHO05D005763 5.4e-08 61.6 55 67.3
PGR142G4197 Punica granatum HOM05D008132 ORTHO05D005763 5.4e-08 61.6 146 56.8
PGR042G2058 Punica granatum HOM05D008132 ORTHO05D005763 7.1e-08 61.2 138 55.8
TPR.G17676 Trifolium pratense HOM05D009657 ORTHO05D005763 7.1e-08 61.2 57 73.7
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 1.2e-07 60.5 151 53.6
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 1.2e-07 60.5 140 62.1
Psat2g028320 Pisum sativum HOM05D009657 ORTHO05D005763 1.6e-07 60.1 57 64.9
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 1.6e-07 60.1 129 62.8
Psat2g028040 Pisum sativum HOM05D009657 ORTHO05D005763 2.1e-07 59.7 57 66.7
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 2.7e-07 59.3 129 57.4
Psat2g026400 Pisum sativum HOM05D009657 ORTHO05D005763 2.7e-07 59.3 54 64.8
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 2.7e-07 59.3 142 59.9
Migut.G00657 Erythranthe guttata HOM05D008132 ORTHO05D005763 3.5e-07 58.9 137 39.4
Migut.G01101 Erythranthe guttata HOM05D008132 ORTHO05D005763 3.5e-07 58.9 137 39.4
Migut.O00629 Erythranthe guttata HOM05D008132 ORTHO05D005763 3.5e-07 58.9 137 39.4
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 4.6e-07 58.5 129 59.7
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 4.6e-07 58.5 129 59.7
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 4.6e-07 58.5 139 54.0
Psat2g028520 Pisum sativum HOM05D009657 ORTHO05D005763 4.6e-07 58.5 54 66.7
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 6.0e-07 58.2 139 53.2
Ciclev10017145m.g Citrus clementina HOM05D016168 ORTHO05D005763 7.9e-07 57.8 59 59.3
PGR042G0640 Punica granatum HOM05D008132 ORTHO05D005763 7.9e-07 57.8 138 47.8
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 1.0e-06 57.4 149 35.6
Psat2g028200 Pisum sativum HOM05D009657 ORTHO05D005763 1.0e-06 57.4 55 61.8
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.7e-06 56.6 143 55.2
VMungo0647G2202 Vigna mungo HOM05D016758 ORTHO05D005763 1.7e-06 56.6 147 57.8
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 3.0e-06 55.8 129 58.9
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 3.0e-06 55.8 141 62.4
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 3.0e-06 55.8 140 57.1
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 5.1e-06 55.1 140 57.1
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 5.1e-06 55.1 140 52.9
Psat0s2407g0200 Pisum sativum HOM05D009657 ORTHO05D005763 5.1e-06 55.1 54 64.8
Psat2g029680 Pisum sativum HOM05D009657 ORTHO05D005763 5.1e-06 55.1 53 64.2
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 6.6e-06 54.7 147 57.8
Thhalv10017460m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 8.7e-06 54.3 130 51.5


User provided reference genes

Program Settings