Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0004088 Lotus japonicus HOM05D000122 ORTHO05D010668 2.1e-42 175.3 86 100.0
Lj2g0018554 Lotus japonicus HOM05D000122 ORTHO05D010668 7.0e-38 160.2 79 100.0
Lj3g0004944 Lotus japonicus HOM05D000122 ORTHO05D010668 7.0e-38 160.2 79 100.0
Lj1g0013563 Lotus japonicus HOM05D000122 ORTHO05D000139 1.5e-37 159.1 79 98.7
Lj3g0025669 Lotus japonicus HOM05D000122 ORTHO05D010668 1.5e-37 159.1 79 98.7
Glyma.03G257000 Glycine max HOM05D000122 ORTHO05D000139 3.7e-23 111.3 78 74.4
Glyma.19G255300 Glycine max HOM05D000122 ORTHO05D000139 1.1e-22 109.8 78 71.8
Medtr7g117310 Medicago truncatula HOM05D000122 ORTHO05D000139 1.6e-21 105.9 81 67.9
Ca_09503_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 2.9e-20 101.7 82 63.4
TPR.G4801 Trifolium pratense HOM05D000122 ORTHO05D000139 1.9e-19 99.0 80 65.0
arahy.Tifrunner.gnm1.ann1.5G1Q9A Arachis hypogaea HOM05D000122 ORTHO05D000139 2.7e-18 95.1 79 64.6
Psat3g002720 Pisum sativum HOM05D000122 ORTHO05D000139 1.0e-17 93.2 81 61.7
VMungo0540G2431 Vigna mungo HOM05D000122 ORTHO05D000139 4.0e-17 91.3 78 65.4
Phvul.006G112200 Phaseolus vulgaris HOM05D000122 ORTHO05D000139 1.8e-14 82.4 78 57.7
Lalb_Chr04g0261571 Lupinus albus HOM05D000122 ORTHO05D000139 1.2e-13 79.7 81 58.0
MD01G1079600 Malus domestica HOM05D000122 ORTHO05D000139 6.1e-10 67.4 64 50.0
Sabra02G0142300 Salix brachista HOM05D000122 ORTHO05D000139 8.0e-10 67.0 66 48.5
Dinv32576 Davidia involucrata HOM05D000122 ORTHO05D000139 1.4e-09 66.2 80 45.0
Potri.002G170000 Populus trichocarpa HOM05D000122 ORTHO05D000139 1.8e-09 65.9 64 48.4
FvH4_7g16300 Fragaria vesca HOM05D000122 ORTHO05D000139 2.3e-09 65.5 76 46.1
FAN06G2360 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.3e-09 65.5 76 46.1
FAN06G2875 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.3e-09 65.5 76 46.1
Nitab4.5_0004506g0120 Nicotiana tabacum HOM05D000122 ORTHO05D000139 3.0e-09 65.1 80 50.0
Prupe.2G186900 Prunus persica HOM05D000122 ORTHO05D000139 3.0e-09 65.1 64 45.3
PGSC0003DMG402017989 Solanum tuberosum HOM05D000122 ORTHO05D000139 4.0e-09 64.7 80 48.8
Manes.01G246900 Manihot esculenta HOM05D000122 ORTHO05D000139 6.8e-09 63.9 83 41.0
Prupe.2G186700 Prunus persica HOM05D000122 ORTHO05D000139 8.9e-09 63.5 64 43.8
FAN10G0800 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.2e-08 63.2 63 47.6
FAN10G2108 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.2e-08 63.2 63 47.6
Peaxi162Scf00403g00524 Petunia axillaris HOM05D000122 ORTHO05D000139 2.0e-08 62.4 80 51.2
RcHm_v2.0_Chr1g0359311 Rosa chinensis HOM05D000122 ORTHO05D000139 2.6e-08 62.0 64 48.4
CAN.G239.2 Capsicum annuum HOM05D000122 ORTHO05D000139 4.4e-08 61.2 80 48.8
FAN01G0211 Fragaria x ananassa HOM05D000122 ORTHO05D000139 5.7e-08 60.8 77 44.2
Nitab4.5_0000258g0120 Nicotiana tabacum HOM05D000122 ORTHO05D000139 9.8e-08 60.1 79 49.4
Potri.014G097900 Populus trichocarpa HOM05D000122 ORTHO05D000139 1.3e-07 59.7 64 45.3
Solyc05g050360.3 Solanum lycopersicum HOM05D000122 ORTHO05D000139 2.8e-07 58.5 66 50.0
Sopen05g028790 Solanum pennellii HOM05D000122 ORTHO05D000139 8.3e-07 57.0 80 45.0
FAN03G2336 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.1e-06 56.6 50 56.0
Ciclev10019048m.g Citrus clementina HOM05D000122 ORTHO05D000139 1.4e-06 56.2 64 45.3


User provided reference genes

Program Settings