Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 1.1e-79 300.1 162 100.0
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 1.1e-79 300.1 162 100.0
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.3e-77 293.1 162 96.9
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 4.9e-77 291.2 162 96.3
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 4.9e-77 291.2 162 96.3
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 4.9e-77 291.2 162 96.3
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 4.9e-77 291.2 162 96.3
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-76 290.0 161 95.0
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-76 290.0 161 95.0
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 1.1e-76 290.0 161 95.0
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 5.4e-76 287.7 161 94.4
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 4.6e-75 284.6 158 96.8
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 6.0e-75 284.3 158 96.8
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.0e-74 283.5 158 95.6
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-74 281.6 158 95.6
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-74 281.6 158 95.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-74 281.6 158 95.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-74 281.6 158 95.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-74 281.6 158 95.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-74 281.6 158 95.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.9e-74 281.6 158 95.6
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 5.1e-74 281.2 158 94.9
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 1.1e-73 280.0 158 94.3
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-73 278.5 158 93.7
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 4.3e-73 278.1 158 93.7
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 7.4e-73 277.3 158 94.3
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 7.4e-73 277.3 158 93.7
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 7.4e-73 277.3 158 93.7
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 2.1e-72 275.8 161 91.3
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 2.8e-72 275.4 159 93.1
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 2.8e-72 275.4 158 93.0
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.6e-72 275.0 158 93.0
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.6e-72 275.0 158 93.0
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 92.4
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-71 273.5 158 92.4
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.8e-71 272.7 158 92.4
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-71 272.3 150 96.7
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 5.8e-70 267.7 158 82.3
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 2.9e-69 265.4 158 90.5
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 8.4e-69 263.8 151 93.4
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 3.2e-68 261.9 159 86.2
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 5.5e-68 261.2 158 81.0
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 5.5e-68 261.2 158 88.0
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 7.9e-67 257.3 158 88.6
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 7.9e-67 257.3 158 88.6
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 3.0e-66 255.4 162 80.2
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 8.1e-64 247.3 158 86.7
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 4.5e-62 241.5 150 88.7
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 7.9e-59 230.7 158 75.3
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.0e-58 230.3 138 81.2
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-58 229.9 140 90.0
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.3e-58 229.2 158 81.6
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 2.3e-58 229.2 133 83.5
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 140 89.3
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 140 89.3
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-57 226.9 140 89.3
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 3.3e-57 225.3 128 95.3
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 2.8e-56 222.2 131 82.4
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 3.4e-54 215.3 155 72.9
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.0e-53 213.8 154 79.2
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 2.2e-53 212.6 158 65.2
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 2.5e-52 209.1 134 87.3
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 9.3e-52 207.2 119 95.0
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 7.9e-51 204.1 102 95.1
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 7.9e-51 204.1 102 95.1
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.8e-50 203.0 132 86.4
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.8e-50 203.0 102 95.1
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 3.9e-50 201.8 99 96.0
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.5e-49 199.9 116 94.8
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 2.8e-48 195.7 97 94.8
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 3.1e-47 192.2 110 94.5
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 9.0e-47 190.7 132 74.2
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.6e-46 189.1 97 92.8
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.6e-46 189.1 111 93.7
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.6e-46 189.1 111 93.7
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 1.9e-44 183.0 94 90.4
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 2.5e-44 182.6 94 90.4
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 2.5e-44 182.6 94 90.4
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 3.2e-44 182.2 92 92.4
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 3.2e-44 182.2 92 92.4
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 4.2e-44 181.8 132 72.7
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 9.4e-44 180.6 95 89.5
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 1.2e-43 180.3 91 92.3
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 1.2e-43 180.3 94 89.4
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 2.1e-43 179.5 155 63.2
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.6e-43 178.3 92 91.3
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-42 175.3 100 95.0
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.7e-42 174.5 91 90.1
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-41 173.3 99 83.8
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.5e-41 172.6 98 95.9
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.8e-40 169.1 95 83.2
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 8.2e-40 167.5 124 68.5
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.1e-39 167.2 94 86.2
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 3.1e-39 165.6 92 82.6
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.5e-38 163.3 98 81.6
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.5e-38 163.3 131 65.6
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 1.3e-37 160.2 91 85.7
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 5.0e-37 158.3 92 81.5
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 1.1e-36 157.1 155 52.9
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 5.5e-36 154.8 91 82.4
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 1.2e-35 153.7 162 54.3
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.6e-35 153.3 90 82.2
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.1e-35 152.9 95 76.8
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-35 152.1 90 81.1
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-35 152.1 90 81.1
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-35 152.1 90 81.1
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 3.0e-34 149.1 76 93.4
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 6.7e-34 147.9 85 83.5
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-31 140.6 72 93.1
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 1.8e-31 139.8 105 69.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 4.1e-31 138.7 69 95.7
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 5.0e-29 131.7 65 95.4
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 1.1e-28 130.6 82 76.8
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 9.4e-28 127.5 113 63.7
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 2.3e-26 122.9 65 87.7
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 4.1e-23 112.1 76 75.0
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 4.5e-22 108.6 150 45.3
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 7.7e-22 107.8 69 75.4
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 1.3e-21 107.1 89 57.3
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.7e-19 99.4 76 65.8
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 3.6e-19 99.0 54 87.0
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.0e-18 97.4 54 85.2
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.4e-18 97.1 53 86.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 1.8e-18 96.7 81 58.0
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 4.0e-18 95.5 70 62.9
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 8.8e-18 94.4 53 84.9
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 2.0e-17 93.2 74 68.9
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 5.7e-17 91.7 64 68.8
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 5.7e-17 91.7 72 65.3
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 3.7e-16 89.0 48 89.6
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.1e-15 87.4 43 95.3
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 2.4e-15 86.3 114 45.6
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 4.5e-14 82.0 45 84.4
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.0e-13 80.9 47 78.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.5e-12 77.0 38 94.7
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 3.2e-12 75.9 55 65.5
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 4.7e-11 72.0 62 58.1
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 8.0e-11 71.2 38 92.1
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 6.8e-10 68.2 52 63.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 4.4e-09 65.5 31 96.8
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 2.8e-08 62.8 42 69.0
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 7.0e-07 58.2 37 78.4
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 7.7e-06 54.7 25 96.0


User provided reference genes

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