Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 8.9e-102 373.6 192 100.0
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 8.7e-89 330.5 188 89.4
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 4.6e-82 308.1 192 85.4
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 4.6e-82 308.1 188 85.1
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 6.7e-81 304.3 192 83.3
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 6.7e-81 304.3 192 83.3
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 1.9e-80 302.8 188 83.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 6.2e-79 297.7 191 81.7
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 6.2e-79 297.7 191 81.7
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 2.4e-78 295.8 188 84.0
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 3.1e-78 295.4 188 81.9
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 4.0e-78 295.0 188 81.9
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.0e-77 292.7 188 82.4
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 2.0e-77 292.7 188 80.9
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.6e-77 292.4 192 80.2
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 9.9e-77 290.4 188 80.9
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 6.4e-76 287.7 193 79.8
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.4e-75 285.8 184 82.1
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 9.3e-75 283.9 225 69.3
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.6e-74 283.1 190 79.5
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 79.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.1e-74 282.7 188 80.3
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 6.0e-74 281.2 194 79.4
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 6.0e-74 281.2 189 78.8
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.5e-72 275.8 189 79.4
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 4.3e-72 275.0 182 80.8
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.4e-70 270.0 188 76.6
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 4.2e-67 258.5 183 78.7
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 2.3e-65 252.7 192 71.4
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-64 248.8 165 80.0
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-64 248.8 165 80.0
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-64 248.8 165 80.0
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-64 248.8 165 80.0
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 3.3e-64 248.8 165 80.0
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.7e-60 236.5 188 68.1
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-59 231.9 136 90.4
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-59 231.9 136 90.4
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.4e-57 226.9 137 87.6
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 4.3e-56 221.9 144 81.9
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 5.7e-56 221.5 124 92.7
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 4.8e-55 218.4 153 77.1
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 8.2e-55 217.6 137 83.9
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 6.9e-54 214.5 145 81.4
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 3.4e-53 212.2 128 88.3
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 5.9e-53 211.5 143 80.4
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 1.7e-52 209.9 128 86.7
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 5.0e-52 208.4 121 90.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 8.5e-52 207.6 141 78.0
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 2.1e-50 203.0 133 80.5
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-50 202.2 135 80.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-50 202.2 135 80.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-50 202.2 135 80.0
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.9e-49 198.7 148 75.7
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.5e-48 196.8 123 82.1
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.4e-48 195.3 125 82.4
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 5.7e-48 194.9 128 81.2
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.3e-47 193.7 132 76.5
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.8e-47 191.8 127 81.1
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-46 190.7 116 87.9
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-46 190.7 116 87.9
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-46 190.7 116 87.9
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.3e-46 188.3 121 82.6
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.6e-45 186.0 129 79.1
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.0e-44 184.1 152 67.1
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.4e-43 180.3 115 82.6
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.2e-43 177.9 188 56.9
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.2e-42 177.2 145 71.0
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.6e-42 176.8 114 79.8
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 3.6e-42 175.6 114 81.6
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.3e-41 172.9 116 83.6
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 7.4e-40 167.9 105 83.8
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 3.7e-39 165.6 115 80.0
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.8e-39 165.2 102 84.3
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-38 163.7 109 79.8
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 3.1e-38 162.5 107 81.3
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.6e-37 159.5 139 64.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 5.0e-36 155.2 95 84.2
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 6.5e-36 154.8 144 62.5
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.5e-36 154.5 96 83.3
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.9e-35 153.3 138 63.0
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.5e-35 152.9 197 50.3
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 4.2e-35 152.1 93 82.8
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.7e-34 149.4 95 85.3
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 2.7e-34 149.4 95 85.3
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 3.6e-34 149.1 91 83.5
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 8.8e-33 144.4 94 79.8
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.2e-32 144.1 129 62.0
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 2.0e-32 143.3 93 82.8
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.6e-32 142.9 160 56.9
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.4e-32 142.1 116 69.8
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 9.7e-32 141.0 111 66.7
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 9.7e-32 141.0 127 61.4
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 9.7e-32 141.0 127 61.4
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 5.3e-30 135.2 90 80.0
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 2.1e-26 123.2 74 86.5
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 2.7e-26 122.9 192 40.1
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 2.3e-25 119.8 72 86.1
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-24 115.2 72 86.1
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 6.3e-23 111.7 76 80.3
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-22 110.2 77 77.9
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.1e-22 109.4 68 85.3
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.4e-22 108.6 76 77.6
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.0e-20 104.4 68 80.9
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 3.8e-20 102.4 74 77.0
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.8e-20 102.4 74 71.6
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.8e-20 102.4 68 79.4
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 1.1e-19 100.9 65 78.5
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-19 100.9 69 73.9
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 1.9e-19 100.1 79 74.7
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 3.3e-19 99.4 114 52.6
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.2e-19 98.2 68 76.5
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 2.1e-18 96.7 57 75.4
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.8e-18 96.3 60 80.0
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 6.1e-18 95.1 60 83.3
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 6.1e-18 95.1 56 80.4
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 8.0e-18 94.7 53 81.1
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.3e-17 93.2 53 81.1
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.2e-17 92.0 53 79.2
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 4.4e-16 89.0 93 57.0
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 5.7e-16 88.6 57 82.5
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.7e-16 88.6 53 77.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.7e-15 87.0 53 84.9
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 2.2e-15 86.7 71 70.4
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 2.2e-15 86.7 50 84.0
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 2.8e-15 86.3 48 81.2
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 4.1e-14 82.4 55 72.7
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.6e-13 80.5 46 87.0
arahy.Tifrunner.gnm1.ann1.KLBW9T Arachis hypogaea HOM05D005015 ORTHO05D005696 3.5e-13 79.3 70 64.3
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 3.8e-12 75.9 55 70.9
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.1e-11 74.3 59 66.1
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-11 73.9 49 79.6
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.3e-11 71.6 49 77.6
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.8e-09 67.0 41 87.8
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.1e-09 66.2 41 75.6
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 6.8e-09 65.1 37 86.5
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 6.8e-09 65.1 37 86.5
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 2.6e-08 63.2 83 49.4
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 5.8e-08 62.0 41 75.6


User provided reference genes

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