Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 5.3e-48 194.1 105 100.0
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 5.3e-48 194.1 105 100.0
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 1.3e-38 162.9 100 90.0
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.0e-38 161.0 98 91.8
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-37 158.3 98 90.8
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-37 158.3 105 84.8
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.2e-37 158.3 105 84.8
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 5.5e-37 157.5 103 86.4
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 5.5e-37 157.5 105 84.8
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 7.9e-36 153.7 92 89.1
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.9e-36 153.7 92 91.3
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.9e-36 153.7 92 91.3
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.9e-36 153.7 92 91.3
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.0e-35 153.3 96 87.5
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.8e-35 152.5 95 88.4
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 3.9e-35 151.4 105 83.8
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 5.1e-35 151.0 95 89.5
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 5.1e-35 151.0 105 82.9
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 5.1e-35 151.0 91 90.1
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.0
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.0
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 6.7e-35 150.6 92 89.1
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 6.7e-35 150.6 92 89.1
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 6.7e-35 150.6 92 89.1
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.7e-35 150.6 105 81.9
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-34 149.8 105 81.0
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 1.1e-34 149.8 105 82.9
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 2.6e-34 148.7 95 86.3
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.3e-34 148.3 105 80.0
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 4.4e-34 147.9 103 81.6
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 4.4e-34 147.9 105 80.0
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 4.4e-34 147.9 100 86.0
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-34 147.1 103 80.6
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 9.7e-34 146.7 105 79.0
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 1.3e-33 146.4 105 79.0
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 1.3e-33 146.4 105 79.0
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 1.3e-33 146.4 105 79.0
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.2e-33 145.6 82 93.9
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 6.3e-33 144.1 95 88.4
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.3e-32 141.0 98 83.7
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 7.0e-32 140.6 86 90.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 4.5e-31 137.9 89 86.5
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 4.5e-31 137.9 89 86.5
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.3e-30 136.3 105 74.3
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 2.9e-30 135.2 105 75.2
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 5.5e-29 131.0 104 73.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 2.1e-28 129.0 119 66.4
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 4.8e-25 117.9 86 77.9
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.2e-25 117.1 82 78.0
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.4e-24 115.5 91 75.8
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.1e-24 115.2 68 89.7
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.2e-23 113.2 85 77.6
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.7e-22 109.4 62 90.3
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 2.9e-22 108.6 103 62.1
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 2.9e-22 108.6 103 62.1
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-21 106.7 91 71.4
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 4.2e-21 104.8 59 91.5
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 4.7e-20 101.3 60 86.7
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 4.7e-20 101.3 75 73.3
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.4e-19 99.8 73 80.8
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 2.3e-19 99.0 77 72.7
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 2.3e-19 99.0 77 72.7
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 2.0e-18 95.9 73 78.1
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 2.0e-18 95.9 73 78.1
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 2.0e-18 95.9 73 78.1
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 2.6e-18 95.5 55 89.1
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-18 94.7 73 80.8
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-18 94.7 73 80.8
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 7.5e-18 94.0 56 92.9
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 1.7e-17 92.8 56 85.7
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.7e-17 92.8 59 83.1
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 3.7e-17 91.7 94 58.5
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 6.3e-17 90.9 59 84.7
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.1e-16 90.1 73 74.0
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.4e-16 89.7 59 88.1
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 2.4e-16 89.0 54 92.6
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 5.4e-16 87.8 48 97.9
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-15 86.7 87 64.4
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 2.7e-15 85.5 57 84.2
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 9.5e-13 77.0 51 76.5
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 2.3e-11 72.4 41 87.8
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 3.0e-11 72.0 45 80.0
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.3e-09 66.6 39 89.7
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 4.9e-09 64.7 46 73.9
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 1.8e-08 62.8 37 83.8
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 7.0e-08 60.8 69 49.3


User provided reference genes

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