Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.4e-50 202.6 101 100.0
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 95.0
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 94.1
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 4.3e-47 191.0 101 94.1
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 94.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 9.6e-47 189.9 101 94.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 2.1e-46 188.7 101 92.1
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 92.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 92.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 6.2e-46 187.2 101 91.1
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 8.1e-46 186.8 101 92.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 8.1e-46 186.8 101 92.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 8.1e-46 186.8 101 92.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 91.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 91.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 91.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 92.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 91.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 91.1
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 4.0e-45 184.5 101 91.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 90.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 90.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 90.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 9.0e-45 183.3 101 90.1
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 90.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.5e-44 182.6 99 91.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.5e-44 182.6 99 91.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.5e-44 182.6 99 91.9
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 7.6e-44 180.3 101 90.1
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 7.6e-44 180.3 101 90.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 8.4e-43 176.8 101 87.1
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 3.2e-42 174.9 98 89.8
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 7.1e-42 173.7 99 87.9
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 9.3e-42 173.3 101 88.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 1.2e-41 172.9 101 86.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 6.0e-41 170.6 97 86.6
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.0e-40 169.9 101 84.2
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.0e-40 169.9 101 84.2
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 1.3e-40 169.5 101 84.2
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 1.8e-40 169.1 101 84.2
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 2.3e-40 168.7 94 89.4
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 3.0e-40 168.3 101 86.1
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 1.9e-39 165.6 101 83.2
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 5.7e-39 164.1 88 89.8
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 9.6e-39 163.3 100 85.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 3.1e-37 158.3 86 93.0
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 4.1e-37 157.9 101 78.2
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 2.6e-36 155.2 101 79.2
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 5.9e-36 154.1 99 78.8
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 7.6e-36 153.7 86 90.7
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 8.4e-35 150.2 93 82.8
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.1e-34 149.8 86 88.4
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 4.6e-33 144.4 101 72.3
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 2.5e-31 138.7 74 86.5
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 3.3e-31 138.3 94 73.4
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 3.3e-31 138.3 79 89.9
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 1.8e-29 132.5 70 87.1
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 1.2e-28 129.8 76 86.8
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 3.4e-28 128.3 97 70.1
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 7.7e-28 127.1 74 83.8
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.0e-27 126.7 72 90.3
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 8.5e-27 123.6 99 61.6
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 6.7e-24 114.0 56 92.9
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 2.5e-23 112.1 64 90.6
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 4.5e-20 101.3 56 83.9
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.3e-19 99.8 62 85.5
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 6.5e-19 97.4 50 88.0
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 5.5e-18 94.4 53 84.9
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 6.1e-17 90.9 57 84.2
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 1.4e-16 89.7 91 60.4
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 1.8e-13 79.3 51 84.3
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.0e-11 73.6 95 48.4
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.7e-11 72.8 51 80.4
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 5.0e-11 71.2 97 50.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 4.2e-10 68.2 33 87.9
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 8.0e-09 63.9 92 46.7
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 1.1e-07 60.1 27 96.3
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.1e-07 60.1 92 42.4
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.1e-07 60.1 92 42.4
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.0e-07 59.3 91 44.0
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.0e-07 59.3 91 44.0
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 7.5e-07 57.4 95 44.2
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 7.5e-07 57.4 32 78.1
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 7.5e-07 57.4 91 40.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 9.7e-07 57.0 91 40.7
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.3e-06 56.6 88 39.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.2e-06 55.8 91 39.6
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 2.2e-06 55.8 95 42.1
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.2e-06 55.8 95 37.9
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 38.9
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 37.9
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 37.9
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 3.7e-06 55.1 94 38.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 3.7e-06 55.1 90 38.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 37.9
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.7e-06 55.1 95 38.9
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 37.2
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 6.3e-06 54.3 90 42.2
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 38.9
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 6.3e-06 54.3 56 46.4
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 8.2e-06 53.9 103 35.0
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 38.3
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 93 37.6
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 93 37.6
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 40.0


User provided reference genes

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