Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 8.2e-154 547.0 266 100.0
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-150 536.6 264 98.5
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 1.1e-150 536.6 266 98.5
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-150 536.6 266 98.1
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.1e-150 536.6 266 98.1
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 5.5e-150 534.3 264 98.1
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.3e-147 525.0 266 96.6
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 7.4e-147 523.9 266 96.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 9.7e-147 523.5 266 96.6
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 6.3e-146 520.8 266 95.9
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 95.9
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.1e-145 520.0 266 95.9
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 6.9e-145 517.3 266 95.9
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.2e-144 516.5 266 95.5
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.2e-144 516.5 266 95.5
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 7.7e-144 513.8 252 99.2
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.0e-143 513.5 266 95.1
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.0e-143 513.5 266 95.1
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.0e-143 513.5 252 98.8
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 1.3e-143 513.1 263 95.8
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.7e-143 512.7 253 98.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-143 512.3 252 98.8
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 95.1
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.1e-142 510.0 252 98.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.9e-142 509.2 266 94.4
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 94.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.4
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 5.1e-140 501.1 263 93.5
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.3e-138 496.5 266 92.9
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 6.9e-137 490.7 252 96.0
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 6.9e-137 490.7 265 92.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-135 484.6 239 98.7
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.8e-132 476.1 265 89.4
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.7e-130 469.5 243 95.9
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.7e-130 469.5 243 95.9
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.7e-130 469.5 266 88.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-130 468.8 263 87.1
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.4e-129 466.5 264 88.6
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 6.5e-127 457.6 240 94.2
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.9e-126 456.1 240 93.8
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 5.5e-126 454.5 262 85.5
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 9.1e-121 437.2 253 87.4
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 8.0e-117 424.1 213 97.7
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.4e-116 423.3 261 82.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.8e-114 414.8 209 96.2
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-112 409.8 209 95.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 4.5e-112 408.3 252 82.5
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 6.5e-111 404.4 211 95.7
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 6.5e-111 404.4 211 95.7
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.4e-107 391.7 257 79.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.1e-105 385.6 209 89.5
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 4.5e-104 381.7 202 94.1
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.5e-102 374.0 209 90.4
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 5.9e-96 354.8 187 95.2
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.2e-89 330.9 184 89.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.7e-82 310.1 161 94.4
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 6.0e-80 301.6 156 94.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 2.4e-76 289.7 251 65.7
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 6.8e-76 288.1 145 95.2
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 8.9e-76 287.7 150 95.3
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.7e-74 283.5 159 89.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.2e-72 277.3 148 93.9
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.7e-72 276.2 145 93.8
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 1.0e-71 274.2 148 91.2
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 4.3e-70 268.9 218 66.1
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.7e-69 265.4 195 73.8
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.6e-67 259.6 130 96.9
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.9e-65 253.4 279 48.7
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 3.3e-62 242.7 120 100.0
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 6.2e-61 238.4 119 97.5
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.4e-60 237.3 122 95.9
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-57 226.9 160 75.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.7e-53 212.6 115 93.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 6.2e-53 211.8 108 95.4
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 5.3e-52 208.8 103 97.1
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-50 204.1 116 85.3
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 1.1e-49 201.1 105 94.3
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.6e-46 188.7 101 94.1
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 1.6e-45 187.2 101 88.1
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-42 176.8 85 97.6
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 4.9e-42 175.6 154 63.0
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 7.1e-41 171.8 210 47.6
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.7e-38 162.2 184 52.7
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 6.9e-36 155.2 81 91.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.4e-35 152.9 260 33.8
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 7.6e-35 151.8 82 92.7
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-34 149.8 108 72.2
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 4.2e-33 146.0 84 86.9
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.2e-33 146.0 149 56.4
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 6.7e-31 138.7 98 73.5
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 82 80.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-28 131.3 76 84.2
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-25 120.2 63 88.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.7e-24 116.7 58 96.6
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.6e-24 116.3 57 94.7
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 3.6e-24 116.3 154 47.4
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-24 115.2 79 77.2
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.9e-23 112.8 68 79.4
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.5e-22 110.9 172 43.6
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.0e-19 100.5 64 78.1
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 8.5e-18 95.1 48 89.6
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-17 94.7 67 71.6
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-17 92.4 65 73.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 3.6e-16 89.7 119 45.4
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 8.0e-16 88.6 61 67.2
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.5e-14 84.3 53 86.8
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-14 84.0 40 90.0
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.4e-14 82.0 65 60.0
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.7e-14 81.6 56 76.8
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-13 80.5 53 83.0
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.7e-13 79.7 59 72.9
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 4.8e-13 79.3 84 51.2
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-08 64.3 31 87.1
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.7e-08 63.5 29 96.6
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.0e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 83.3
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 5.2e-07 59.3 70 42.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.7e-07 58.9 74 44.6
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 8.8e-07 58.5 31 83.9
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.7e-06 55.8 58 39.7


User provided reference genes

Program Settings