Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.3e-116 422.2 203 100.0
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 3.1e-97 358.6 176 98.3
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 6.1e-93 344.4 178 94.4
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.3e-87 326.6 194 85.1
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 6.1e-85 317.8 195 81.5
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.2e-83 313.5 196 81.6
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 5.8e-83 311.2 161 93.8
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 2.4e-81 305.8 170 87.1
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 2.3e-79 299.3 158 91.1
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 3.9e-79 298.5 178 84.3
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 5.0e-79 298.1 158 91.1
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.5e-78 296.6 158 90.5
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 7.3e-78 294.3 158 89.9
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.6e-77 293.1 158 89.9
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 3.1e-76 288.9 158 88.0
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 8.9e-76 287.3 158 87.3
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 8.9e-76 287.3 158 87.3
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 8.9e-76 287.3 195 76.4
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 2.0e-75 286.2 158 88.0
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 3.7e-74 282.0 158 86.1
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 6.4e-74 281.2 155 87.1
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 8.3e-74 280.8 158 86.1
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 6.6e-71 271.2 158 84.2
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.6e-69 266.5 151 86.1
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 4.0e-68 261.9 162 82.1
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 4.0e-68 261.9 162 82.1
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 4.0e-68 261.9 162 82.1
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 1.2e-67 260.4 162 81.5
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 1.2e-67 260.4 162 81.5
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.3e-66 256.9 162 80.9
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.7e-66 256.5 128 97.7
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 3.7e-66 255.4 158 81.0
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 1.0e-63 247.3 162 78.4
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.1e-61 239.6 158 77.2
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 2.5e-54 216.1 128 82.8
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.6e-53 213.4 143 78.3
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.1e-53 213.0 122 82.8
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.1e-49 198.0 126 77.8
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 7.1e-49 198.0 107 90.7
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 9.6e-46 187.6 101 87.1
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.8e-45 185.3 114 80.7
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 2.2e-42 176.4 118 77.1
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.3e-39 166.4 88 89.8
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 6.2e-37 158.3 97 80.4
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 8.1e-37 157.9 93 84.9
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 1.1e-36 157.5 88 86.4
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.5e-33 145.2 112 67.0
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.6e-32 143.7 89 78.7
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 2.7e-32 142.9 74 89.2
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 6.7e-31 138.3 84 78.6
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 1.9e-30 136.7 102 68.6
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 9.6e-30 134.4 83 75.9
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 9.6e-30 134.4 83 75.9
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.1e-29 133.3 81 79.0
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 2.2e-26 123.2 83 71.1
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.3e-21 107.5 72 76.4
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 2.0e-19 100.1 54 85.2
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 2.0e-19 100.1 71 69.0
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 3.4e-19 99.4 63 79.4
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 5.9e-19 98.6 58 79.3
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.9e-17 93.6 58 81.0
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.0e-15 87.8 58 72.4
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 5.1e-15 85.5 44 88.6
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 2.0e-14 83.6 49 79.6
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 7.4e-14 81.6 74 60.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-10 70.9 45 77.8
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 2.5e-09 66.6 56 60.7
A06p10930 Brassica napus HOM05D007924 ORTHO05D010328 7.4e-06 55.1 43 58.1
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 7.4e-06 55.1 25 96.0


User provided reference genes

Program Settings