Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.7e-103 379.4 199 100.0
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 3.5e-93 345.1 220 87.3
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 4.6e-85 318.2 198 88.9
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 4.6e-85 318.2 198 88.9
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 4.6e-85 318.2 198 88.9
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 6.0e-85 317.8 210 85.2
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-84 315.8 181 93.9
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-84 315.8 181 93.9
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-84 315.8 181 93.9
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-84 315.8 181 93.9
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 1.3e-82 310.1 197 85.8
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.1e-81 307.0 197 85.8
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.4e-81 306.6 198 85.4
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.4e-81 306.6 198 85.4
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.4e-81 306.6 198 85.4
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.8e-81 306.2 187 88.8
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.8e-81 306.2 197 85.3
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 9.0e-81 303.9 197 84.8
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.2e-80 303.5 198 84.8
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 5.8e-80 301.2 199 84.9
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 5.8e-80 301.2 197 84.3
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 5.8e-80 301.2 197 84.3
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 2.2e-79 299.3 198 83.8
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 2.2e-79 299.3 198 83.8
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 3.8e-79 298.5 181 89.5
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 3.8e-79 298.5 181 89.5
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 4.9e-79 298.1 199 84.4
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.5e-79 297.7 201 82.1
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.5e-79 297.7 201 82.1
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 9.3e-78 293.9 201 81.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-77 290.8 199 81.4
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-77 290.8 199 81.4
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 2.3e-76 289.3 199 80.9
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 3.9e-76 288.5 198 81.8
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.1e-75 287.0 176 88.6
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 6.3e-74 281.2 195 80.0
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.6e-72 274.2 201 75.6
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 1.3e-71 273.5 197 77.7
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-71 273.1 181 81.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-69 266.2 197 75.1
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 6.1e-69 264.6 183 80.3
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.5e-67 259.2 203 73.9
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 9.7e-67 257.3 210 73.8
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-59 233.8 174 76.4
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.4e-59 231.9 197 70.1
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 2.2e-58 229.6 153 81.0
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 8.2e-58 227.6 140 87.1
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 9.1e-57 224.2 159 76.7
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.2e-54 214.5 201 65.7
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.7e-53 212.6 130 87.7
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.8e-52 209.9 124 91.1
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 2.3e-52 209.5 132 84.8
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 5.2e-52 208.4 130 87.7
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.4e-49 199.5 191 62.3
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 5.2e-44 181.8 187 58.8
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 2.6e-43 179.5 117 83.8
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 5.0e-39 165.2 103 88.3
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 1.2e-37 160.6 91 90.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 5.2e-36 155.2 115 76.5
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.4e-35 152.5 188 54.3
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 5.0e-31 138.7 89 87.6
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 6.5e-31 138.3 88 88.6
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 4.7e-29 132.1 95 82.1
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-27 126.7 181 50.8
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 2.2e-26 123.2 95 71.6
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 8.0e-21 104.8 59 91.5
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-20 103.6 173 45.1
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 1.5e-19 100.5 53 88.7
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 9.8e-19 97.8 69 84.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.4e-17 93.2 124 52.4
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 9.2e-17 91.3 57 87.7
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.2e-17 91.3 56 76.8
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.3e-15 87.4 63 77.8
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 4.3e-14 82.4 62 74.2
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.2e-13 80.9 61 72.1
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 4.4e-11 72.4 37 94.6
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 3.7e-10 69.3 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 3.7e-10 69.3 37 91.9
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 9.2e-09 64.7 89 53.9
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 9.2e-09 64.7 49 73.5
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.0e-08 63.5 40 85.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-07 61.2 34 94.1
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 1.0e-07 61.2 34 94.1
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 1.0e-07 61.2 34 94.1
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.1e-06 57.8 44 75.0


User provided reference genes

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