Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 2.8e-97 358.6 178 100.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.8e-93 345.9 178 96.6
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 2.2e-86 322.4 178 88.2
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.4e-85 318.9 178 88.2
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 6.0e-84 314.3 178 87.1
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.3e-83 312.4 173 90.2
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.1e-80 303.5 178 84.8
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.8e-80 302.8 173 85.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 5.4e-77 291.2 179 82.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.6e-76 289.7 171 84.8
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.1e-76 289.3 175 84.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 81.6
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 78.8
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.3e-75 286.6 179 79.9
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.7e-75 286.2 178 79.2
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.9e-75 285.0 174 81.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 79.3
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 80.4
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.5e-74 283.1 179 78.2
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.5e-74 283.1 178 80.9
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 79.9
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.3e-74 282.0 178 78.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 4.3e-74 281.6 178 80.3
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 7.3e-74 280.8 173 82.7
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 9.5e-74 280.4 167 81.4
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 9.5e-74 280.4 178 80.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 9.5e-74 280.4 178 78.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 78.2
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 78.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.1e-73 279.3 175 80.6
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 6.2e-73 277.7 167 80.8
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 8.1e-73 277.3 169 81.1
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.1e-72 276.9 177 76.8
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 79.9
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 178 77.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 77.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 2.3e-72 275.8 181 77.9
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.5
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.0e-72 275.0 169 82.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 5.2e-72 274.6 179 77.1
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.2e-71 273.5 171 78.9
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.2e-71 273.5 173 76.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 75.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.0e-71 272.7 178 75.8
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 75.8
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.4e-71 271.9 178 75.8
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 4.4e-71 271.6 176 79.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 4.4e-71 271.6 175 77.1
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 76.0
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.6e-71 270.8 179 76.0
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 7.6e-71 270.8 173 80.3
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 75.4
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 75.4
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 75.4
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 76.0
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.2e-70 269.2 174 77.0
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.9e-70 268.9 169 79.9
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 74.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 6.4e-70 267.7 176 73.9
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 73.7
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.9
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.4e-69 266.5 203 69.5
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 75.4
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.9
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 73.7
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.4e-69 265.8 176 76.1
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 74.3
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 74.3
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 73.7
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 75.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 74.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 4.1e-69 265.0 179 74.9
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 4.1e-69 265.0 179 74.9
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 74.3
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 5.4e-69 264.6 178 74.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 71.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 5.4e-69 264.6 178 73.0
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 7.1e-69 264.2 176 72.7
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 73.2
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 9.2e-69 263.8 179 74.3
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 73.7
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 74.9
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 73.7
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.1e-68 262.7 171 76.6
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 74.9
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 73.7
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 73.7
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.6e-68 261.5 177 74.0
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 6.0e-68 261.2 169 75.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 7.8e-68 260.8 179 72.6
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 7.8e-68 260.8 179 73.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.0e-67 260.4 149 85.2
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 1.0e-67 260.4 180 73.9
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.3e-67 259.2 178 72.5
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 3.0e-67 258.8 149 84.6
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 3.9e-67 258.5 169 76.3
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 73.2
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 8.6e-67 257.3 179 72.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 8.6e-67 257.3 193 69.4
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 72.6
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 70.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 173 74.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.9e-66 256.1 179 72.6
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.9e-66 256.1 179 71.5
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 4.3e-66 255.0 181 72.4
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 5.6e-66 254.6 173 72.8
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 7.3e-66 254.2 168 73.8
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.6e-66 253.8 210 65.2
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 71.4
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 4.7e-65 251.5 171 73.7
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 68.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 5.2e-64 248.1 175 70.9
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 9.0e-64 247.3 174 71.8
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.0e-63 246.1 179 70.4
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.4e-63 245.4 158 78.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 9.9e-63 243.8 180 70.0
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.2e-62 242.7 170 72.4
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.1e-61 240.4 160 75.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.4e-61 239.2 176 72.2
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.4e-61 239.2 209 62.2
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.0e-59 233.8 170 70.6
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.9e-58 229.6 178 65.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 5.6e-58 228.0 175 65.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.1e-57 226.1 145 77.2
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.4e-48 196.1 132 77.3
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-47 193.7 170 64.7
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.8e-46 188.7 171 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 6.4e-46 188.0 162 56.2
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 6.4e-46 188.0 116 81.0
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 7.1e-45 184.5 116 77.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 7.1e-45 184.5 116 81.9
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.7e-44 182.6 165 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 7.9e-44 181.0 163 55.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.0e-43 179.1 165 55.2
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 7.4e-42 174.5 167 52.1
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 4.9e-38 161.8 86 90.7
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.9e-37 159.8 83 90.4
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.6e-36 156.8 167 54.5
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 7.9e-36 154.5 184 51.1
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 3.9e-35 152.1 171 50.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 6.7e-35 151.4 160 49.4
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 8.7e-35 151.0 105 72.4
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.3e-34 149.1 222 40.5
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 7.4e-34 147.9 88 77.3
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 6.9e-32 141.4 162 47.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.7e-30 136.7 83 77.1
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-29 133.7 137 54.7
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.2e-29 132.5 98 70.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 8.8e-27 124.4 113 61.9
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-26 123.2 93 65.6
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.8e-25 119.4 92 64.1
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.4e-24 117.1 84 66.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 4.5e-23 112.1 97 59.8
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.9e-22 109.4 75 74.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.6e-20 103.6 137 48.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 2.9e-14 82.8 53 71.7
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.9e-13 80.1 216 32.4
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.2e-12 77.4 42 81.0
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 2.7e-12 76.3 53 64.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.0e-10 70.1 42 66.7
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 5.7e-10 68.6 152 34.9
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 9.7e-10 67.8 84 46.4


User provided reference genes

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