Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.5e-86 321.6 166 100.0
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 6.4e-40 167.9 164 65.2
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.1e-39 167.2 162 66.7
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 7.4e-36 154.5 168 58.3
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.4e-34 149.4 196 51.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.1e-34 149.1 174 55.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.0e-34 148.7 151 61.6
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 5.3e-34 148.3 173 56.6
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 6.9e-34 147.9 190 53.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 5.8e-33 144.8 181 52.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.7e-32 143.3 165 53.3
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.2e-32 142.9 179 51.4
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.6e-30 136.7 169 52.7
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.6e-30 135.2 169 52.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.6e-30 135.2 169 52.1
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 6.0e-30 134.8 165 52.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.0e-29 132.5 169 51.5
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.9e-29 132.1 164 53.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 8.7e-29 131.0 153 55.6
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.5e-28 129.4 172 51.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 5.7e-28 128.3 181 50.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 7.4e-28 127.9 167 50.3
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.3e-27 127.1 154 55.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.6e-27 126.7 154 55.8
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.6e-27 126.7 167 50.3
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.8e-27 125.9 177 50.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 2.8e-27 125.9 160 51.9
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.4e-26 123.6 173 47.4
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 2.4e-26 122.9 167 51.5
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.1e-26 122.5 166 50.6
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 4.0e-26 122.1 156 53.8
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.2e-25 120.6 154 53.9
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.5e-25 120.2 173 46.2
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.0e-25 119.8 161 50.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 5.8e-25 118.2 170 48.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.3e-24 117.1 185 48.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 2.2e-24 116.3 183 47.5
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.2e-24 116.3 161 47.8
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-24 115.9 185 48.6
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.9e-24 115.9 175 48.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.8e-24 115.5 184 47.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.8e-24 115.5 184 47.3
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.8e-24 115.5 154 48.7
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 5.0e-24 115.2 164 46.3
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.5e-24 114.8 154 50.0
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.5e-24 114.8 154 50.0
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.1e-23 114.0 151 49.0
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.4e-23 113.6 173 50.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.4e-23 113.6 176 47.7
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.9e-23 113.2 173 43.9
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-23 113.2 167 49.1
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.9e-23 113.2 142 50.7
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.5e-23 112.8 172 44.2
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 3.2e-23 112.5 179 45.3
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.2e-23 112.1 167 47.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.5e-23 111.7 159 46.5
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 5.5e-23 111.7 156 47.4
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 7.1e-23 111.3 178 44.9
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.3e-23 110.9 158 50.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 9.3e-23 110.9 158 50.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 9.3e-23 110.9 178 43.8
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.1e-22 109.8 158 49.4
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-22 109.0 168 48.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-22 109.0 168 48.2
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.5e-22 109.0 167 50.3
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.5e-22 109.0 166 47.0
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.6e-22 108.6 188 44.7
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 4.6e-22 108.6 155 46.5
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 6.1e-22 108.2 170 46.5
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 6.1e-22 108.2 170 46.5
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 6.1e-22 108.2 184 46.2
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.0e-21 107.5 169 43.8
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.3e-21 107.1 183 44.8
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.8e-21 106.7 170 45.9
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.8e-21 106.7 182 46.7
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 3.0e-21 105.9 185 46.5
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 3.9e-21 105.5 158 46.8
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.9e-21 105.5 151 46.4
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 8.7e-21 104.4 146 48.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.3e-20 102.1 164 45.1
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 7.4e-20 101.3 165 43.6
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 9.7e-20 100.9 183 45.4
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.6e-19 100.1 99 58.6
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.6e-19 100.1 154 45.5
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 6.3e-19 98.2 166 42.8
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 8.2e-19 97.8 175 40.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.4e-18 97.1 171 43.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.9e-18 94.7 160 43.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 6.9e-18 94.7 182 43.4
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 6.9e-18 94.7 163 44.2
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 9.0e-18 94.4 163 41.1
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 2.0e-17 93.2 163 43.6
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.0e-17 93.2 164 40.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.6e-17 92.8 170 43.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.9e-17 91.7 159 43.4
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 5.9e-17 91.7 154 44.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 7.7e-17 91.3 177 42.4
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.7e-16 90.1 156 39.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.7e-16 90.1 149 47.7
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 2.2e-16 89.7 181 42.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.9e-16 89.4 174 40.8
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 5.0e-16 88.6 181 37.6
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 6.5e-16 88.2 170 39.4
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.1e-15 87.4 143 44.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 7.2e-15 84.7 149 43.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 3.6e-14 82.4 140 47.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 7.9e-14 81.3 154 37.7
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.9e-14 81.3 170 39.4
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.0e-13 80.9 166 36.1
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-13 80.5 155 36.8
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.8e-13 80.1 154 37.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.3e-13 79.7 154 36.4
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.3e-13 79.7 154 36.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.3e-13 79.7 155 39.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 5.1e-13 78.6 155 36.8
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 5.1e-13 78.6 160 42.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 8.8e-13 77.8 154 39.0
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.8e-13 77.8 84 54.8
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-11 73.6 143 38.5
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.8e-11 72.8 141 37.6
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-10 70.9 101 48.5
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-10 70.9 101 48.5
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-10 70.9 101 48.5
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.5e-09 67.0 167 36.5
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.0e-09 66.6 97 44.3
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 5.9e-09 65.1 123 39.8
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 5.9e-09 65.1 159 38.4
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 2.9e-08 62.8 122 39.3
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 8.5e-08 61.2 64 53.1
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 8.5e-08 61.2 153 34.6
Lalb_Chr05g0211621 Lupinus albus HOM05D005006 ORTHO05D005903 1.1e-07 60.8 104 46.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-07 60.1 137 32.1
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.2e-07 58.9 153 32.0
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 4.2e-07 58.9 153 32.0
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.7e-06 56.2 99 41.4
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.7e-06 56.2 166 34.9


User provided reference genes

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