Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 7.5e-189 663.7 335 100.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.0e-100 370.9 292 67.1
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.2e-96 357.5 290 66.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.6e-96 356.3 289 65.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 7.5e-96 354.8 290 66.2
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 5.4e-94 348.6 292 65.8
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.2e-90 337.4 291 63.2
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.6e-90 337.0 290 64.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.0e-84 316.2 270 64.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.1e-82 310.1 278 60.1
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 8.9e-81 304.7 243 65.8
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 5.8e-80 302.0 290 58.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.7e-77 293.1 290 56.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 6.6e-76 288.5 289 54.7
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.5e-67 260.0 210 65.2
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 7.3e-67 258.5 292 51.0
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.2e-66 255.4 290 48.3
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.1e-65 253.1 293 48.8
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 9.9e-64 248.1 172 70.9
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-63 246.9 293 49.5
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.2e-63 246.9 291 50.2
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.8e-63 246.1 233 57.1
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 6.4e-63 245.4 291 49.1
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.7e-60 237.3 298 48.7
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.9e-60 236.1 310 45.8
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.9e-59 233.8 293 47.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 3.3e-59 233.0 292 47.9
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 5.6e-59 232.3 309 46.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 9.6e-59 231.5 292 45.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.6e-58 229.6 229 56.3
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-58 229.6 293 46.8
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 6.9e-57 225.3 290 47.2
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.2e-56 224.6 297 45.5
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 4.4e-56 222.6 317 44.5
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 9.3e-54 214.9 395 37.5
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.3e-52 211.1 310 44.2
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 3.0e-52 209.9 308 41.2
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.9e-51 207.2 290 42.4
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 7.3e-51 205.3 282 43.3
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 7.3e-51 205.3 239 50.2
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 4.8e-50 202.6 291 44.7
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.2e-50 202.2 291 41.9
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.4e-49 201.1 299 43.5
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 1.8e-49 200.7 302 42.1
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 5.3e-49 199.1 309 41.1
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 5.3e-49 199.1 295 41.0
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-48 197.6 289 40.1
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 2.6e-48 196.8 299 40.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 5.8e-48 195.7 276 42.8
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 9.9e-48 194.9 247 45.3
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.9e-47 193.4 284 41.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 6.4e-47 192.2 302 43.0
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-46 190.7 289 40.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.9e-46 190.7 294 43.5
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.3e-46 188.3 291 41.9
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 9.3e-46 188.3 368 39.1
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.6e-45 187.6 276 43.8
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.7e-45 186.8 276 43.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.0e-44 184.9 304 42.8
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.3e-44 183.7 276 42.8
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.3e-44 183.7 300 40.7
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.9e-44 183.0 281 40.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 6.7e-44 182.2 297 39.1
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 6.7e-44 182.2 287 41.5
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 6.7e-44 182.2 287 39.7
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 2.5e-43 180.3 330 36.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.5e-43 180.3 383 36.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.3e-43 179.5 391 36.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 5.6e-43 179.1 217 49.3
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 7.4e-43 178.7 293 39.2
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.6e-42 177.6 329 37.1
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.6e-42 177.6 294 39.5
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.6e-42 177.6 292 38.7
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.8e-42 176.8 340 35.9
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 6.2e-42 175.6 294 41.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.4e-41 174.5 280 39.6
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.4e-41 174.5 325 36.9
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.4e-41 173.7 288 41.0
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 5.8e-40 169.1 341 34.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.6e-40 168.7 286 38.8
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 9.9e-40 168.3 165 54.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-39 167.2 319 37.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 6.4e-39 165.6 333 34.2
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 6.4e-39 165.6 347 35.2
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 6.4e-39 165.6 315 36.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.1e-38 164.9 348 34.8
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.9e-38 164.1 284 38.4
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-38 164.1 340 34.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 4.2e-38 162.9 372 32.5
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.1e-38 162.2 284 37.0
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 7.1e-38 162.2 320 34.1
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.2e-37 161.4 337 37.4
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.6e-37 161.0 342 36.0
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.3e-36 157.9 312 35.9
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.3e-36 157.1 167 52.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.3e-36 157.1 167 52.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 3.0e-36 156.8 196 46.4
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.0e-36 156.8 371 31.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.1e-36 156.0 296 37.5
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 8.7e-36 155.2 262 41.6
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.9e-35 154.1 291 37.5
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.6e-35 152.5 283 37.5
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 7.4e-35 152.1 254 41.3
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 7.4e-35 152.1 351 35.6
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-34 151.4 302 37.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-34 151.4 293 36.2
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-34 151.4 350 33.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.6e-34 151.0 371 30.5
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.1e-34 150.6 153 50.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 4.8e-34 149.4 166 50.6
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.1e-33 148.3 251 39.8
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.3e-33 146.0 296 38.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 5.3e-33 146.0 296 38.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.9e-33 145.6 292 34.2
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.9e-33 145.6 175 44.6
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.2e-32 144.8 240 39.2
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.2e-32 144.8 295 37.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.5e-32 144.4 259 38.2
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.5e-32 144.4 342 30.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.6e-32 143.7 260 39.2
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.6e-32 143.7 260 39.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 4.5e-32 142.9 153 48.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 4.5e-32 142.9 396 28.3
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 7.6e-32 142.1 345 30.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.5e-30 137.1 332 33.4
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.2e-30 136.7 282 36.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 7.1e-30 135.6 306 33.0
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.6e-29 132.9 288 33.0
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 4.6e-29 132.9 226 40.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 6.0e-29 132.5 165 44.8
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 6.0e-29 132.5 261 36.0
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.0e-28 131.7 214 43.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.0e-28 131.7 172 44.2
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.8e-28 131.0 214 43.0
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.3e-28 130.6 169 43.8
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.3e-28 130.6 279 36.6
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 6.7e-28 129.0 296 36.5
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.4e-27 125.6 195 39.5
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.3e-26 124.8 216 40.3
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.8e-26 123.6 270 35.9
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.4e-25 121.3 351 30.2
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 3.1e-25 120.2 207 35.7
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 5.9e-24 115.9 228 37.3
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.3e-23 114.8 295 31.2
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 2.2e-23 114.0 139 49.6
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 7.9e-21 105.5 106 47.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 6.7e-20 102.4 258 33.3
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.9e-19 100.9 245 31.4
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.4e-17 94.7 242 31.4
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.3e-17 92.8 118 41.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-16 91.3 87 49.4
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 8.5e-15 85.5 140 38.6
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.2e-14 83.6 89 46.1
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.7e-13 80.5 95 42.1
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.6e-11 73.9 65 49.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-11 73.9 99 44.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 5.7e-11 72.8 194 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.8e-10 70.5 164 30.5
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 3.1e-09 67.0 80 42.5
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 2.9e-07 60.5 138 34.8
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.8e-07 60.1 54 51.9
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.9e-06 57.8 122 31.1
arahy.Tifrunner.gnm1.ann1.TSYD5C Arachis hypogaea HOM05D004296 ORTHO05D005045 3.2e-06 57.0 66 47.0


User provided reference genes

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