Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 0.0e+00 1389.8 797 100.0
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 0.0e+00 1274.6 813 89.1
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 6.0e-285 984.2 815 69.3
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.6e-282 976.1 820 69.9
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 2.4e-278 962.2 812 70.6
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 7.3e-275 950.7 809 69.2
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 2.6e-272 942.2 799 68.3
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 4.9e-271 937.9 812 67.4
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.1e-270 936.8 830 68.3
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.0e-268 930.2 808 65.1
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.8e-268 929.5 813 66.2
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 1.8e-268 929.5 812 68.6
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 1.1e-262 910.2 817 64.1
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.5e-254 882.5 804 63.7
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 7.9e-253 877.5 818 62.5
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.0e-252 875.5 839 59.8
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 1.9e-251 872.8 817 64.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.4e-249 866.7 819 61.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 2.6e-248 862.4 800 64.1
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.6e-248 862.4 807 64.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.7e-247 859.8 805 63.1
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 1.1e-246 857.1 835 62.8
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.5e-246 855.9 805 63.1
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 3.2e-246 855.5 835 61.1
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 9.4e-246 854.0 871 59.5
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 2.1e-245 852.8 795 59.6
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.1e-245 851.3 835 60.7
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 1.0e-244 850.5 834 61.9
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 7.4e-243 844.3 801 59.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 2.2e-242 842.8 822 60.8
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 3.1e-241 839.0 807 63.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 6.9e-241 837.8 809 59.0
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 9.1e-241 837.4 831 56.8
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 9.1e-241 837.4 816 62.1
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 9.1e-241 837.4 807 64.4
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 1.2e-240 837.0 802 64.1
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 5.9e-240 834.7 798 60.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 3.8e-239 832.0 820 59.8
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 4.2e-238 828.6 819 61.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 9.4e-238 827.4 824 63.5
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 1.6e-237 826.6 801 64.0
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.6e-237 826.6 816 59.6
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 3.6e-237 825.5 815 62.0
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.3e-236 822.8 815 60.6
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 6.7e-236 821.2 817 59.9
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.6e-235 819.3 806 60.9
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 3.3e-235 818.9 799 60.5
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.2e-234 816.2 819 58.0
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.6e-232 809.3 819 60.4
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.5e-232 808.9 816 57.6
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 3.5e-232 808.9 796 57.5
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.9e-232 808.1 806 62.9
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 7.7e-232 807.7 829 58.0
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 7.7e-232 807.7 815 59.6
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 5.5e-230 801.6 806 59.1
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-229 800.0 803 58.0
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 4.0e-228 795.4 795 58.1
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 1.1e-227 793.9 812 62.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 3.3e-227 792.3 822 56.6
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.2e-226 789.6 821 54.8
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 2.8e-226 789.3 807 61.2
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-225 787.3 804 61.2
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.4e-225 786.9 818 56.8
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 1.2e-224 783.9 815 60.2
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 1.5e-222 776.9 828 55.6
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 7.2e-222 774.6 799 59.4
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.6e-221 773.5 821 55.9
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.2e-220 768.5 805 56.6
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 3.4e-219 765.8 834 59.4
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 8.3e-218 761.1 806 56.7
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 7.0e-217 758.1 827 54.3
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 3.5e-216 755.7 810 54.4
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.5e-214 750.4 879 55.4
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.5e-214 750.4 812 61.7
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 7.2e-214 748.0 792 56.2
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.2e-213 747.3 812 56.2
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-213 746.9 810 55.7
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.7e-213 745.3 807 55.5
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 8.0e-213 744.6 767 56.5
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 7.5e-211 738.0 810 56.3
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 4.2e-206 722.2 803 54.8
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-204 716.1 822 51.1
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 9.2e-201 704.5 803 53.7
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 2.0e-200 703.4 753 59.0
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 3.1e-196 689.5 789 54.2
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.2e-196 688.7 789 54.0
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 5.2e-196 688.7 789 54.2
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.3e-188 663.3 791 51.7
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 2.3e-188 663.3 667 61.9
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 2.1e-184 650.2 683 59.4
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.7e-184 649.8 821 46.5
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 4.6e-184 649.0 794 51.3
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 1.5e-182 644.0 816 52.8
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 7.6e-179 631.7 817 52.3
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 9.9e-179 631.3 807 51.9
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 2.2e-178 630.2 814 53.3
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.1e-177 627.9 814 53.2
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-176 624.4 795 48.9
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.1e-176 623.6 812 50.7
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.2e-171 607.8 793 51.7
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 7.6e-171 605.1 809 49.6
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.2e-170 603.6 793 49.3
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 6.4e-170 602.1 805 51.7
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 1.6e-168 597.4 803 50.3
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 3.5e-168 596.3 819 46.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.9e-166 590.5 803 47.6
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.1e-161 574.7 814 47.3
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.4e-161 573.5 908 45.2
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.2e-154 550.4 581 61.4
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.7e-152 543.5 833 41.1
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 4.3e-150 536.2 757 45.3
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 6.2e-149 532.3 634 56.9
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.5e-142 511.1 439 61.3
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.7e-134 481.9 704 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.8e-132 477.6 642 47.7
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 3.2e-129 466.8 736 45.5
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.2e-123 448.4 556 54.3
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.9e-121 441.0 500 53.6
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.6e-120 436.8 474 59.7
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.2e-115 421.8 407 67.6
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.7e-114 417.9 844 38.7
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.1e-113 415.2 465 53.1
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 8.8e-111 405.6 892 37.9
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 1.2e-107 395.2 518 53.1
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 2.3e-103 380.9 346 62.1
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 7.0e-100 369.4 517 45.5
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 3.5e-99 367.1 550 43.3
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.0e-98 363.2 297 63.6
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 7.7e-91 339.3 275 65.1
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.9e-90 337.4 770 37.9
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 4.7e-88 330.1 902 36.1
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.8e-84 318.2 451 45.7
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 8.0e-80 302.8 768 30.6
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.1e-73 282.3 458 37.6
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.5e-73 282.0 657 38.1
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 6.2e-56 223.4 791 28.8
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.7e-53 215.3 201 59.2
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.9e-53 214.5 385 50.6
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.4e-52 212.2 354 48.3
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 3.1e-47 194.5 179 64.2
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-47 193.7 394 37.8
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-36 157.5 328 37.8
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-33 149.1 307 38.8
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.2e-30 139.4 126 55.6
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 4.9e-29 134.0 142 46.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 5.5e-28 130.6 136 58.1
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.6e-27 129.0 127 61.4
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-22 111.7 105 58.1
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.6e-22 110.2 133 51.1
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-21 109.8 147 45.6
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.0e-18 99.8 339 30.4
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-18 98.2 285 33.3
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.7e-18 97.1 109 52.3
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.3e-16 92.8 92 53.3
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 3.1e-15 88.2 92 53.3
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.1e-15 88.2 295 29.2
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.3e-15 87.4 78 53.8
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 5.3e-15 87.4 78 53.8
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.9e-14 84.0 119 45.4
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.9e-13 81.6 92 50.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.4e-12 79.3 76 59.2
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-12 79.0 337 30.0
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 4.2e-12 77.8 147 39.5
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 6.1e-11 73.9 97 46.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-10 72.8 70 55.7
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-10 72.4 256 30.5
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-10 72.4 153 35.9
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.9e-10 71.2 80 50.0
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 6.7e-10 70.5 72 48.6
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 3.3e-09 68.2 50 74.0
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 3.7e-08 64.7 120 40.8
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 2.4e-07 62.0 41 68.3
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.1e-07 61.6 141 34.0
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 5.3e-07 60.8 65 50.8
Sed0014055 Sechium edule HOM05D003551 ORTHO05D004869 9.1e-07 60.1 81 43.2
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-06 59.3 65 47.7
HPP92_028506 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.0e-06 58.9 42 69.0


User provided reference genes

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