Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-83 312.4 147 100.0
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.2e-76 288.9 147 93.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.6e-69 265.4 147 82.3
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 4.5e-69 264.6 147 82.3
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.7e-68 262.7 148 83.8
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.2e-68 262.3 147 81.6
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 4.9e-68 261.2 148 83.8
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.5e-68 260.8 147 81.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 6.5e-68 260.8 147 81.6
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.1e-67 260.0 147 81.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.4e-67 259.6 147 82.3
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 3.2e-67 258.5 147 81.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.2e-67 258.1 147 81.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 7.1e-67 257.3 148 81.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 79.6
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 6.0e-66 254.2 140 81.4
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.9e-66 253.8 148 81.1
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 7.9e-66 253.8 147 78.9
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.9
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.1e-65 251.1 147 80.3
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 5.1e-65 251.1 147 78.9
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-64 249.6 145 80.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.9e-64 249.2 147 80.3
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 2.5e-64 248.8 147 81.0
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 77.6
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 79.6
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 77.6
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.7e-64 247.7 147 77.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.7e-64 246.9 147 78.2
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 78.9
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 78.9
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 77.6
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 78.9
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 147 77.6
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 147 77.6
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.6e-63 246.1 148 77.7
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.2e-63 245.7 147 75.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.2e-63 245.7 150 78.0
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.7e-63 245.0 150 78.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.7e-63 245.0 148 76.4
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 76.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 6.3e-63 244.2 147 78.2
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.3e-63 244.2 147 76.9
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.3e-63 244.2 147 76.9
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.3e-63 244.2 147 75.5
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.2e-63 243.8 147 75.5
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-62 243.0 148 77.7
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-62 242.7 147 75.5
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 147 76.9
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 75.5
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 76.9
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 73.5
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 73.5
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 73.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 132 81.8
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 6.9e-62 240.7 147 76.2
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.0e-62 240.4 132 81.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.0e-62 240.4 132 81.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.2e-61 240.0 147 75.5
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.5e-61 239.6 148 77.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 74.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 74.8
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 74.1
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 74.3
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 75.5
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 76.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.9e-61 237.7 149 75.8
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 5.9e-61 237.7 147 74.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 5.9e-61 237.7 145 75.2
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 5.9e-61 237.7 147 74.1
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.9e-61 237.7 147 74.1
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.6e-61 237.3 147 76.2
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 7.6e-61 237.3 147 74.8
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-60 236.9 147 72.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-60 236.9 148 77.0
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 73.5
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 76.2
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.9e-60 235.3 147 72.1
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 5.0e-60 234.6 147 72.8
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 6.5e-60 234.2 144 73.6
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.5e-60 233.8 147 70.1
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-59 233.4 141 77.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.4e-59 233.0 147 70.1
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-59 233.0 148 74.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.9e-59 232.6 147 73.5
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 5.5e-59 231.1 147 70.7
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 5.5e-59 231.1 138 76.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 71.6
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.2e-58 229.9 147 70.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 72.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 73.0
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 4.6e-58 228.0 130 82.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 6.1e-58 227.6 147 70.7
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 7.9e-58 227.3 147 72.1
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.0e-57 226.9 147 68.7
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.4e-57 226.5 147 70.1
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-57 226.1 147 68.7
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 70.7
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.5e-56 222.2 147 69.4
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 7.4e-56 220.7 148 68.9
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 9.7e-56 220.3 150 69.3
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 152 68.4
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.8e-55 218.8 147 68.0
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 70.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 68.7
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 6.3e-55 217.6 148 70.3
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 6.3e-55 217.6 148 70.3
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 8.2e-55 217.2 148 70.9
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 8.2e-55 217.2 148 70.9
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 68.0
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.8e-54 216.1 151 68.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.8e-54 216.1 126 77.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.1e-54 214.9 147 68.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 5.3e-54 214.5 147 69.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 68.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 68.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 9.1e-54 213.8 148 66.9
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 9.1e-54 213.8 123 79.7
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.4e-53 211.8 139 66.2
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.9e-53 211.1 147 63.9
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.7e-53 210.7 148 67.6
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.2e-52 209.1 130 76.9
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-52 209.1 132 68.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 2.2e-52 209.1 147 66.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 66.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 67.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 2.5e-51 205.7 150 66.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 2.5e-51 205.7 150 66.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 2.5e-51 205.7 150 66.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.5e-51 205.7 147 63.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.2e-51 204.9 150 66.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 9.4e-51 203.8 133 73.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.6e-50 201.8 151 61.6
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.1e-50 201.1 148 65.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.1e-50 201.1 148 65.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.1e-50 201.1 148 65.5
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.1e-49 198.0 118 73.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.5e-48 196.4 147 63.9
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.2e-47 192.6 147 61.9
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.8e-46 189.5 150 64.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 8.8e-41 170.6 147 63.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.1e-38 163.7 147 57.1
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 2.6e-37 159.1 102 73.5
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.5e-36 154.5 97 73.2
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.5e-36 154.1 147 56.5
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 4.2e-35 151.8 102 66.7
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 4.4e-32 141.7 134 53.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.2e-29 133.7 122 52.5
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.8e-25 119.8 166 39.8
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.3e-23 111.3 116 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.8e-18 95.9 90 52.2
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.8e-17 93.2 76 63.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 5.2e-17 91.7 68 64.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.5e-11 73.6 37 83.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 9.5e-11 70.9 91 35.2
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 8.3e-07 57.8 77 36.4


User provided reference genes

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