Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.0e-58 229.9 124 100.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 5.3e-55 217.6 120 95.8
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.3e-53 213.0 119 94.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.7e-53 212.6 120 94.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.5e-52 208.8 123 88.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 2.5e-52 208.8 120 93.3
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 3.2e-52 208.4 120 90.0
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 7.2e-52 207.2 119 90.8
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 7.2e-52 207.2 120 93.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-51 206.1 120 90.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 4.6e-51 204.5 130 87.7
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-50 203.4 120 89.2
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.0e-50 203.4 119 89.9
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 5.1e-50 201.1 120 86.7
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.7e-50 200.7 120 88.3
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.9e-49 199.1 119 90.8
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.3e-49 198.4 119 87.4
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 5.7e-49 197.6 120 85.8
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.3e-48 196.4 119 84.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.2e-48 195.7 122 84.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.8e-48 195.3 120 85.8
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.3e-48 194.1 121 85.1
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.1e-47 193.4 118 85.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.4e-47 193.0 121 83.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.8e-47 192.6 121 83.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 86.6
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 86.6
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.1e-47 191.8 119 83.2
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 4.1e-47 191.4 122 82.8
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 9.0e-47 190.3 120 82.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.2e-46 189.9 120 84.2
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-46 189.5 121 83.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 1.5e-46 189.5 120 84.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 2.0e-46 189.1 119 84.9
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.0e-46 189.1 120 84.2
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.0e-46 189.1 120 84.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.6e-46 188.7 105 95.2
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 2.6e-46 188.7 120 83.3
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.4e-46 188.3 120 82.5
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.4e-46 188.3 121 82.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.5e-46 188.0 106 92.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 4.5e-46 188.0 119 83.2
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 7.7e-46 187.2 121 82.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 7.7e-46 187.2 119 82.4
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.0e-45 186.8 120 82.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.0e-45 186.8 120 82.5
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-45 186.4 114 84.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 2.2e-45 185.7 118 84.7
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.2e-45 185.7 118 83.9
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.9e-45 185.3 122 81.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-45 185.3 124 80.6
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-45 185.3 120 82.5
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.9e-45 185.3 120 82.5
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 3.8e-45 184.9 119 83.2
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 6.5e-45 184.1 121 81.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 6.5e-45 184.1 123 80.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 8.5e-45 183.7 121 80.2
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 8.5e-45 183.7 121 80.2
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 8.5e-45 183.7 121 79.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.5e-45 183.7 119 80.7
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 7.2e-44 180.6 120 80.8
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 7.2e-44 180.6 119 79.8
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.2e-43 179.9 121 78.5
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 2.7e-43 178.7 117 78.6
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.6e-43 178.3 119 80.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.6e-43 178.3 119 80.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 3.6e-43 178.3 119 78.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 3.6e-43 178.3 116 80.2
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.9e-43 177.2 119 78.2
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.4e-42 176.4 121 75.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-42 175.6 122 77.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.0e-42 175.3 121 79.3
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.1e-42 174.5 113 78.8
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 6.7e-42 174.1 119 74.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 6.7e-42 174.1 121 77.7
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 8.8e-42 173.7 115 79.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.1e-41 173.3 119 77.3
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.5e-41 172.9 101 87.1
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.0e-41 172.6 111 80.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.3e-41 171.8 119 78.2
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.3e-41 171.4 102 84.3
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 4.3e-41 171.4 100 87.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.3e-41 171.4 100 87.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.3e-41 171.4 100 87.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 4.3e-41 171.4 100 87.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.3e-41 171.4 120 77.5
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.7e-41 171.0 120 76.7
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 9.7e-41 170.2 105 82.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.3e-40 169.9 119 77.3
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.7e-40 169.5 100 86.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.2e-40 169.1 115 74.8
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.8e-40 167.9 116 74.1
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 8.2e-40 167.2 103 80.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 8.2e-40 167.2 105 81.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.8e-39 166.0 122 72.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.4e-39 165.6 122 73.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 2.4e-39 165.6 122 73.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 3.1e-39 165.2 122 72.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.1e-39 164.9 125 71.2
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 4.1e-39 164.9 112 72.3
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 5.3e-39 164.5 116 75.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.3e-39 164.5 122 71.3
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.3e-39 164.5 122 71.3
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 9.1e-39 163.7 122 71.3
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.0e-38 162.5 113 71.7
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 3.4e-38 161.8 121 73.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 5.9e-38 161.0 118 70.3
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.7e-38 160.6 118 72.9
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.0e-37 160.2 98 80.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.0e-37 160.2 122 73.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.2e-37 159.1 120 71.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.9e-36 156.0 120 70.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.5e-36 155.6 106 78.3
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 7.2e-36 154.1 109 69.7
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.2e-35 153.3 113 73.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 7.9e-35 150.6 107 75.7
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.3e-34 149.1 96 77.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.7e-34 147.5 88 88.6
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 6.7e-34 147.5 121 65.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.1e-33 146.7 85 85.9
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.5e-33 146.4 120 67.5
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.7e-33 144.4 106 74.5
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 8.5e-29 130.6 103 67.0
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.1e-28 130.2 85 81.2
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 4.2e-28 128.3 111 61.3
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.7e-27 125.6 92 75.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.7e-27 125.6 92 75.0
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.0e-26 123.6 107 61.7
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.8e-24 114.8 71 81.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.3e-24 114.4 67 86.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 3.1e-23 112.1 69 81.2
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.6e-22 109.8 68 79.4
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 3.5e-22 108.6 117 61.5
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.7e-21 106.3 100 55.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.8e-21 105.1 70 75.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.5e-20 102.4 64 73.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-19 99.4 74 71.6
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-18 95.9 73 71.2
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-17 93.6 85 62.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.0e-17 92.8 57 80.7
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.7e-17 91.3 56 80.4
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-16 89.7 68 72.1
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 5.4e-15 84.7 50 90.0
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.0e-13 80.5 94 48.9
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.3e-13 80.1 103 45.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 3.8e-13 78.6 114 42.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 6.5e-13 77.8 82 56.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 2.7e-11 72.4 69 59.4
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 4.7e-11 71.6 53 67.9
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.0e-10 70.5 56 64.3
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.8e-10 69.7 60 58.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 8.8e-10 67.4 91 47.3
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 8.8e-10 67.4 44 75.0
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-09 65.9 75 52.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.4e-09 65.5 122 36.1
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-08 63.2 38 81.6
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 9.2e-07 57.4 46 67.4
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 1.6e-06 56.6 58 55.2
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 7.7e-06 54.3 44 61.4
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 7.7e-06 54.3 44 61.4


User provided reference genes

Program Settings