Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 1.2e-143 513.1 254 100.0
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 3.9e-97 358.6 260 68.5
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 5.7e-96 354.8 260 68.5
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 2.4e-94 349.4 261 67.4
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 5.9e-93 344.7 263 68.8
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 1.9e-91 339.7 263 68.1
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 8.8e-89 330.9 259 64.5
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 8.5e-84 314.3 279 60.2
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 8.5e-84 314.3 279 60.2
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 7.5e-80 301.2 263 60.5
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 1.1e-78 297.4 256 62.9
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 4.2e-75 285.4 279 58.1
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 8.3e-71 271.2 267 56.2
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 4.1e-62 242.3 263 51.3
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 7.7e-61 238.0 261 50.2
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 2.3e-60 236.5 300 47.7
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 2.9e-60 236.1 308 45.1
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 5.0e-60 235.3 260 46.9
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 1.0e-57 227.6 260 49.2
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 2.2e-55 219.9 262 48.1
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 2.9e-55 219.5 266 48.1
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 8.3e-55 218.0 262 48.1
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 8.3e-55 218.0 306 42.8
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 3.2e-54 216.1 209 57.9
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 2.7e-53 213.0 265 48.7
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 4.6e-53 212.2 251 49.0
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 1.0e-52 211.1 268 46.3
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 1.5e-51 207.2 252 47.6
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 5.6e-51 205.3 273 44.7
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 9.5e-51 204.5 263 47.1
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.6e-50 203.8 272 46.7
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 2.8e-50 203.0 273 45.4
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 8.0e-50 201.4 244 46.7
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 1.0e-49 201.1 269 44.2
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 2.3e-49 199.9 271 45.0
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 6.8e-49 198.4 269 45.4
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 3.4e-48 196.1 257 44.0
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 5.8e-48 195.3 272 44.1
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 1.3e-47 194.1 286 44.8
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 1.3e-47 194.1 264 43.9
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 1.3e-47 194.1 255 43.1
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 2.2e-47 193.4 259 42.1
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 3.7e-47 192.6 261 45.2
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 2.4e-46 189.9 257 44.0
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 4.1e-46 189.1 303 39.9
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 5.4e-46 188.7 261 41.8
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 9.2e-46 188.0 277 39.4
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 1.2e-45 187.6 259 42.1
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 1.2e-45 187.6 272 43.0
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 2.0e-45 186.8 264 42.0
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 2.0e-45 186.8 255 43.9
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 3.5e-45 186.0 257 42.0
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 6.0e-45 185.3 211 48.3
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 1.0e-44 184.5 297 38.4
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 1.0e-44 184.5 273 38.8
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 3.0e-44 183.0 265 42.3
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 1.5e-43 180.6 282 41.5
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 2.5e-43 179.9 279 40.9
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 4.3e-43 179.1 273 40.7
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 4.3e-43 179.1 255 43.1
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 1.2e-42 177.6 284 40.8
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 1.2e-42 177.6 256 43.0
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 1.2e-42 177.6 280 38.6
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 2.8e-42 176.4 283 41.0
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 3.6e-42 176.0 314 37.6
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 2.3e-41 173.3 286 39.9
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 2.3e-41 173.3 307 36.5
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 5.2e-41 172.2 257 41.2
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 1.2e-40 171.0 256 44.9
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.5e-40 170.6 293 36.5
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 1.5e-40 170.6 268 39.2
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 2.6e-40 169.9 274 40.9
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 9.8e-40 167.9 262 41.6
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 1.3e-39 167.5 307 35.8
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 1.7e-39 167.2 292 37.0
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 4.9e-39 165.6 284 38.4
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 4.9e-39 165.6 264 39.8
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 8.3e-39 164.9 278 37.8
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.1e-38 164.5 290 40.0
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 1.2e-37 161.0 158 57.0
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 3.9e-36 156.0 305 35.7
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 5.1e-36 155.6 262 36.3
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 2.5e-35 153.3 284 37.3
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 1.2e-34 151.0 191 49.7
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 8.1e-34 148.3 255 36.9
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 5.2e-33 145.6 239 38.5
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 2.0e-32 143.7 233 40.3
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 3.4e-32 142.9 258 39.9
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 1.1e-30 137.9 267 39.0
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.9e-30 137.1 200 43.5
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 2.1e-29 133.7 195 40.5
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 8.6e-28 128.3 216 37.5
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 1.9e-27 127.1 220 39.1
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.9e-27 127.1 110 55.5
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 9.6e-27 124.8 264 34.5
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 9.6e-27 124.8 306 34.3
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 3.6e-26 122.9 257 36.2
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 1.4e-25 120.9 257 31.1
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 2.6e-24 116.7 58 91.4
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 1.5e-19 100.9 213 38.0
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 2.0e-16 90.5 127 41.7
Haze_13451 Corylus avellana HOM05D007438 ORTHO05D009395 3.8e-15 86.3 112 44.6
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 7.9e-13 78.6 135 40.0
Pp3c2_23860 Physcomitrium patens HOM05D007438 ORTHO05D009395 5.1e-12 75.9 189 31.7
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 5.6e-11 72.4 149 34.9
Duzib168G1890 Durio zibethinus HOM05D000136 ORTHO05D000080 1.7e-07 60.8 112 29.5
HanXRQChr12g0355901 Helianthus annuus HOM05D000136 ORTHO05D000080 1.7e-07 60.8 127 29.9
PGR042G1027 Punica granatum HOM05D000136 ORTHO05D000080 2.2e-07 60.5 129 28.7
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 3.8e-07 59.7 107 29.0
Gohir.D05G092600 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.8e-07 59.7 112 30.4
SEGI_10361 Sequoiadendron giganteum HOM05D000136 ORTHO05D000958 3.8e-07 59.7 100 32.0
CiPaw.03G011300 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.4e-07 58.9 110 29.1
ATR0051G012 Amborella trichopoda HOM05D000136 ORTHO05D000080 8.4e-07 58.5 119 31.1
COL.COLO4_19060 Corchorus olitorius HOM05D000136 ORTHO05D000080 8.4e-07 58.5 113 30.1
COL.COLO4_19064 Corchorus olitorius HOM05D000136 ORTHO05D000080 1.1e-06 58.2 112 30.4
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 1.1e-06 58.2 98 31.6
Gohir.A02G085900 Gossypium hirsutum HOM05D000136 ORTHO05D000080 1.4e-06 57.8 112 28.6
Gorai.004G006500 Gossypium raimondii HOM05D000136 ORTHO05D000080 1.4e-06 57.8 112 29.5
AagrBONN_evm.TU.Sc2ySwM_117.3691 Anthoceros agrestis HOM05D000136 ORTHO05D000080 1.9e-06 57.4 108 29.6
CAN.G853.6 Capsicum annuum HOM05D000136 ORTHO05D000080 1.9e-06 57.4 104 29.8
Thecc.09G310000 Theobroma cacao HOM05D000136 ORTHO05D000080 1.9e-06 57.4 112 30.4
Cc02_g23670 Coffea canephora HOM05D000136 ORTHO05D000080 2.4e-06 57.0 104 28.8
Gohir.A05G091700 Gossypium hirsutum HOM05D000136 ORTHO05D000080 2.4e-06 57.0 111 29.7
Gohir.D07G106100 Gossypium hirsutum HOM05D000136 ORTHO05D000080 2.4e-06 57.0 134 27.6
Lj1g0022257 Lotus japonicus HOM05D000136 ORTHO05D000080 2.4e-06 57.0 101 29.7
Thecc.06G020500 Theobroma cacao HOM05D000136 ORTHO05D000080 2.4e-06 57.0 100 28.0
Ah.07g204810 Amaranthus hybridus HOM05D001099 ORTHO05D000958 3.2e-06 56.6 109 30.3
Gohir.A05G091600 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.2e-06 56.6 112 29.5
Gorai.009G095000 Gossypium raimondii HOM05D000136 ORTHO05D000080 3.2e-06 56.6 112 29.5
Os11g0244200 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 3.2e-06 56.6 106 34.0
AagrBONN_evm.TU.Sc2ySwM_344.2012 Anthoceros agrestis HOM05D000136 ORTHO05D000080 4.2e-06 56.2 100 30.0
CBR_g34368 Chara braunii HOM05D000136 ORTHO05D000080 4.2e-06 56.2 108 28.7
AUR62035610 Chenopodium quinoa HOM05D001099 ORTHO05D000958 4.2e-06 56.2 100 30.0
Duzib170G0307 Durio zibethinus HOM05D000136 ORTHO05D000080 4.2e-06 56.2 112 30.4
Gorai.009G360700 Gossypium raimondii HOM05D000136 ORTHO05D000080 4.2e-06 56.2 111 28.8
Lsat_1_v5_gn_9_82001 Lactuca sativa HOM05D000136 ORTHO05D000080 4.2e-06 56.2 127 29.9
Peaxi162Scf00071g00002 Petunia axillaris HOM05D002321 ORTHO05D006445 4.2e-06 56.2 104 27.9
Peaxi162Scf00797g00012 Petunia axillaris HOM05D001099 ORTHO05D000958 4.2e-06 56.2 97 33.0
SEGI_19445 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 4.2e-06 56.2 109 31.2
MSTRG.16461 Avicennia marina HOM05D000136 ORTHO05D000080 5.5e-06 55.8 112 27.7
CANSAT01G1589 Cannabis sativa HOM05D000136 ORTHO05D000080 5.5e-06 55.8 109 28.4
CANSAT01G3011 Cannabis sativa HOM05D000136 ORTHO05D000080 5.5e-06 55.8 104 29.8
Cfa004429 Carpinus fangiana HOM05D000136 ORTHO05D000080 5.5e-06 55.8 102 30.4
ClCG01G000120 Citrullus lanatus HOM05D001099 ORTHO05D000958 5.5e-06 55.8 111 30.6
Dinv14779 Davidia involucrata HOM05D001099 ORTHO05D000958 5.5e-06 55.8 99 30.3
Mapoly0045s0028 Marchantia polymorpha HOM05D000136 ORTHO05D000080 5.5e-06 55.8 109 31.2
Sed0014752 Sechium edule HOM05D000136 ORTHO05D000080 5.5e-06 55.8 107 27.1
THA.LOC104806613 Tarenaya hassleriana HOM05D000136 ORTHO05D000080 5.5e-06 55.8 101 28.7
Carub.0001s4152 Capsella rubella HOM05D000136 ORTHO05D007933 7.1e-06 55.5 96 30.2
Ciclev10016547m.g Citrus clementina HOM05D001099 ORTHO05D000958 7.1e-06 55.5 106 31.1
Gohir.A07G102000 Gossypium hirsutum HOM05D000136 ORTHO05D000080 7.1e-06 55.5 134 26.9
Gohir.D02G062200 Gossypium hirsutum HOM05D000136 ORTHO05D000080 7.1e-06 55.5 112 28.6
Gorai.001G114300 Gossypium raimondii HOM05D000136 ORTHO05D000080 7.1e-06 55.5 134 26.9
Gorai.005G070000 Gossypium raimondii HOM05D000136 ORTHO05D000080 7.1e-06 55.5 112 28.6
Lsat_1_v5_gn_9_81920 Lactuca sativa HOM05D000136 ORTHO05D000080 7.1e-06 55.5 124 29.8
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 7.1e-06 55.5 104 30.8
Aqoxy5G03580 Aquilegia oxysepala HOM05D001099 ORTHO05D000958 9.3e-06 55.1 125 27.2
Cpa.g.sc10.258 Carica papaya HOM05D000136 ORTHO05D007933 9.3e-06 55.1 96 26.0
CiPaw.04G007700 Carya illinoinensis HOM05D000136 ORTHO05D000080 9.3e-06 55.1 101 28.7
CDE04G3561 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 9.3e-06 55.1 102 26.5
AUR62006016 Chenopodium quinoa HOM05D001099 ORTHO05D000958 9.3e-06 55.1 100 29.0
CsaV3_1G035820 Cucumis sativus L. HOM05D000136 ORTHO05D000080 9.3e-06 55.1 108 25.9
DCAR_029183 Daucus carota HOM05D000136 ORTHO05D000080 9.3e-06 55.1 104 26.9
Eucgr.G00061 Eucalyptus grandis HOM05D000136 ORTHO05D000080 9.3e-06 55.1 101 27.7
Gorai.001G114100 Gossypium raimondii HOM05D000136 ORTHO05D000080 9.3e-06 55.1 134 26.9
Lsat_1_v5_gn_8_4541 Lactuca sativa HOM05D001099 ORTHO05D000958 9.3e-06 55.1 111 28.8
Psat5g093880 Pisum sativum HOM05D001099 ORTHO05D000958 9.3e-06 55.1 138 29.0
Prupe.1G586200 Prunus persica HOM05D000136 ORTHO05D000080 9.3e-06 55.1 102 29.4
SGA_v2.0_scaffold131G34438 Striga asiatica HOM05D000136 ORTHO05D000080 9.3e-06 55.1 110 30.0


User provided reference genes

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