Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.6e-225 785.8 415 100.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 8.2e-177 624.0 417 79.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.7e-169 598.6 415 77.1
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 3.1e-168 595.5 415 77.1
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 3.8e-166 588.6 420 75.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.9e-165 586.3 415 75.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.2e-165 585.1 416 77.2
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 9.4e-165 583.9 415 76.6
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.2e-164 583.6 415 76.9
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 6.1e-164 581.3 415 75.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.1e-160 570.5 416 75.0
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 5.4e-152 541.6 358 82.1
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.2e-148 530.4 416 70.7
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.2e-148 530.4 416 70.7
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.8e-144 516.5 416 68.5
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 5.9e-143 511.5 418 66.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 5.0e-142 508.4 415 68.2
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 4.4e-138 495.4 416 66.8
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 7.5e-138 494.6 417 67.1
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.7e-137 493.4 405 68.1
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 4.1e-136 488.8 416 65.1
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.5e-135 485.7 416 65.6
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 5.9e-135 485.0 417 65.9
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 2.5e-133 479.6 417 64.5
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.0e-131 474.2 412 64.3
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 2.6e-130 469.5 415 62.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.4e-130 468.8 410 63.4
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 2.2e-129 466.5 416 63.9
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.9e-129 466.1 412 63.8
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 6.4e-129 464.9 420 61.9
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 6.0e-127 458.4 464 59.5
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.7e-126 456.8 400 62.8
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.3e-126 456.4 416 62.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.9e-126 455.7 413 62.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 3.3e-125 452.6 418 61.0
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.6e-124 450.3 411 62.8
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 3.6e-124 449.1 416 59.4
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 6.2e-124 448.4 416 61.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.4e-123 447.2 336 72.0
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.8e-123 446.8 416 60.8
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 2.6e-122 443.0 414 61.1
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.4e-122 442.6 410 61.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.3e-121 440.7 411 61.8
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-121 439.5 381 67.2
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 8.3e-121 438.0 416 60.6
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-120 437.6 441 59.0
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.1e-120 437.6 415 58.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-120 437.2 425 59.5
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.1e-120 435.6 407 60.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.4e-120 435.3 417 59.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 5.4e-120 435.3 414 58.7
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.4e-120 435.3 416 58.9
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 9.2e-120 434.5 413 59.8
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 5.1e-118 428.7 411 61.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 5.1e-118 428.7 408 60.3
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.5e-117 426.4 410 60.5
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 9.5e-117 424.5 416 59.6
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.7e-116 422.2 385 59.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.2e-116 421.8 421 58.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 8.1e-116 421.4 398 59.8
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.8e-115 420.2 385 59.2
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.2e-115 418.7 386 58.8
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 6.8e-115 418.3 418 56.5
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.0e-114 416.8 386 58.5
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.6e-114 416.4 417 59.0
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 3.4e-114 416.0 433 57.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.4e-114 416.0 418 58.1
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.2e-112 407.9 395 57.2
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 9.2e-112 407.9 416 56.5
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.1e-111 406.8 386 60.6
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.5e-111 406.0 414 58.7
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 4.6e-111 405.6 363 63.1
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.0e-111 405.2 413 57.1
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.0e-111 405.2 355 64.8
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 5.6e-109 398.7 421 54.4
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 4.4e-106 389.0 510 47.8
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 7.6e-106 388.3 406 54.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.7e-105 387.1 416 55.3
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 8.4e-105 384.8 409 55.3
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 8.4e-105 384.8 415 55.2
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 3.2e-104 382.9 384 59.9
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 4.2e-104 382.5 413 55.7
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 7.1e-104 381.7 425 55.5
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 7.8e-103 378.3 501 48.7
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.9e-102 375.9 412 56.1
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-101 374.4 396 58.6
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.5e-101 374.0 403 52.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 9.6e-101 371.3 400 53.8
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.1e-99 367.9 399 54.1
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.1e-99 367.9 412 52.9
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.0e-99 365.9 416 51.7
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 6.9e-99 365.2 391 53.7
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 6.9e-99 365.2 391 53.7
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 5.4e-96 355.5 402 51.2
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.2e-95 354.4 391 52.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.6e-95 354.0 391 51.9
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.1e-95 353.6 405 51.6
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.7e-95 353.2 432 48.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.1e-91 341.3 408 50.2
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.4e-91 340.1 399 50.6
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.2e-90 337.8 399 50.4
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.9e-89 333.2 415 49.6
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 5.1e-86 322.4 416 47.6
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 8.1e-84 315.1 412 48.8
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.0e-83 311.6 334 56.9
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.8e-81 306.2 378 52.1
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.9e-80 303.9 294 59.9
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.2e-79 301.2 233 70.0
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 4.6e-79 299.3 364 51.6
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.3e-65 254.6 360 47.2
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 2.9e-65 253.4 413 44.8
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 3.6e-63 246.5 351 47.3
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 3.0e-62 243.4 472 37.7
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 3.7e-60 236.5 360 44.2
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.4e-59 234.6 319 48.3
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 2.9e-57 226.9 431 38.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 3.6e-55 219.9 250 54.8
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.8e-52 209.5 239 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 6.7e-46 189.1 430 33.7
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 3.7e-44 183.3 136 70.6
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.4e-35 152.9 173 56.1
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 3.5e-34 150.2 152 52.0
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 3.5e-34 150.2 152 52.0
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.8e-31 140.6 83 74.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.2e-29 135.2 350 34.6
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 8.3e-28 129.0 141 51.8
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 5.6e-24 116.3 290 32.1
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 6.4e-20 102.8 98 63.3
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.4e-20 102.8 139 46.8
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.1e-19 100.1 73 79.5
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.7e-18 97.4 65 76.9
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.7e-12 78.2 39 79.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.9e-12 77.4 123 43.9
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.0e-10 71.2 93 50.5
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.7e-10 70.9 171 35.7
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.3e-09 68.6 86 51.2
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.6e-08 63.2 42 81.0
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 6.8e-06 56.2 74 54.1


User provided reference genes

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