Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.7e-118 430.6 529 100.0
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 7.5e-58 229.2 129 84.5
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 1.3e-57 228.4 237 64.1
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 2.2e-57 227.6 232 63.8
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 9.2e-56 222.2 123 85.4
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 3.5e-55 220.3 124 82.3
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 4.5e-55 219.9 234 63.2
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 5.9e-55 219.5 129 79.8
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 1.3e-54 218.4 129 79.1
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 5.0e-54 216.5 125 79.2
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.6e-52 211.5 121 81.0
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 2.8e-52 210.7 130 76.2
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 4.7e-52 209.9 120 80.0
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 5.2e-51 206.5 118 81.4
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.5e-50 204.9 130 73.8
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 2.6e-50 204.1 119 78.2
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 3.4e-50 203.8 129 73.6
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 5.8e-50 203.0 119 78.2
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 9.8e-50 202.2 116 79.3
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 6.4e-49 199.5 116 76.7
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 2.4e-48 197.6 122 77.9
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 4.1e-48 196.8 119 80.7
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 5.4e-48 196.4 119 77.3
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 1.2e-47 195.3 124 73.4
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 2.0e-47 194.5 122 74.6
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.5e-47 193.7 125 73.6
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 3.9e-46 190.3 124 70.2
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.1e-45 188.7 119 72.3
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.1e-45 188.7 130 65.4
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.9e-45 188.0 130 66.2
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 3.3e-45 187.2 119 69.7
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 4.3e-45 186.8 126 68.3
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.6e-45 186.4 126 69.0
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 5.6e-45 186.4 130 65.4
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 9.5e-45 185.7 125 68.0
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.2e-44 185.3 127 67.7
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.6e-44 184.9 113 74.3
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.1e-44 184.5 127 66.1
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.1e-43 182.2 121 70.2
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 1.4e-43 181.8 112 72.3
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.8e-43 181.4 130 64.6
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 5.2e-43 179.9 128 64.8
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 1.5e-42 178.3 127 66.9
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.5e-42 178.3 126 62.7
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 2.0e-42 177.9 129 66.7
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 2.0e-42 177.9 127 66.1
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 2.6e-42 177.6 125 64.8
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 7.5e-42 176.0 129 62.0
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 9.8e-42 175.6 127 66.1
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 1.3e-41 175.3 124 64.5
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 1.7e-41 174.9 129 63.6
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 1.7e-41 174.9 126 66.7
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.2e-41 174.5 114 68.4
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 66.1
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 65.4
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 65.4
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 65.4
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 65.4
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 2.9e-41 174.1 127 65.4
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 2.9e-41 174.1 129 64.3
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 4.9e-41 173.3 239 60.3
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 6.4e-41 172.9 121 66.9
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 8.3e-41 172.6 126 65.9
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 8.3e-41 172.6 126 65.9
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 8.3e-41 172.6 126 65.9
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 8.3e-41 172.6 126 65.9
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 8.3e-41 172.6 126 65.9
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 8.3e-41 172.6 107 74.8
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.1e-40 172.2 113 70.8
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.1e-40 172.2 114 68.4
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 2.4e-40 171.0 126 65.9
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.4e-40 171.0 113 69.0
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 2.4e-40 171.0 114 67.5
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 3.2e-40 170.6 135 64.4
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 4.1e-40 170.2 129 65.1
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 4.1e-40 170.2 113 69.9
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 5.4e-40 169.9 121 67.8
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 7.0e-40 169.5 127 63.8
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 9.2e-40 169.1 108 71.3
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.2e-39 168.7 124 62.9
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 3.5e-39 167.2 120 68.3
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 4.6e-39 166.8 130 61.5
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 4.6e-39 166.8 125 62.4
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 4.6e-39 166.8 119 63.9
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 7.8e-39 166.0 128 62.5
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 1.0e-38 165.6 124 60.5
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.3e-38 165.2 128 63.3
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.3e-38 165.2 124 63.7
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 2.3e-38 164.5 114 65.8
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 2.3e-38 164.5 238 58.0
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.9e-38 163.7 121 64.5
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.9e-38 163.7 121 65.3
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 3.9e-38 163.7 125 64.8
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 3.9e-38 163.7 126 61.1
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 5.1e-38 163.3 96 84.4
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 6.6e-38 162.9 121 62.8
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 8.6e-38 162.5 119 63.9
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 8.6e-38 162.5 113 65.5
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 1.1e-37 162.2 121 63.6
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 1.1e-37 162.2 130 60.8
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.9e-37 161.4 123 63.4
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.9e-37 161.4 124 61.3
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 4.3e-37 160.2 129 62.0
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 4.3e-37 160.2 113 66.4
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 4.3e-37 160.2 126 61.1
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 5.6e-37 159.8 124 62.1
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.3e-37 159.5 122 63.1
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 7.3e-37 159.5 123 64.2
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 2.1e-36 157.9 128 59.4
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 2.1e-36 157.9 118 65.3
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.8e-36 157.5 126 58.7
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 4.7e-36 156.8 128 60.9
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 8.1e-36 156.0 128 60.9
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 1.1e-35 155.6 120 60.0
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 1.4e-35 155.2 122 60.7
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.8e-35 154.8 128 58.6
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.3e-35 154.5 111 64.9
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 2.3e-35 154.5 118 61.0
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.1e-35 154.1 129 59.7
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 5.2e-35 153.3 126 57.1
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 5.2e-35 153.3 126 57.1
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 6.8e-35 152.9 118 61.9
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.5e-34 151.8 119 62.2
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 2.0e-34 151.4 119 61.3
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 2.6e-34 151.0 128 60.2
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 3.4e-34 150.6 111 64.0
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.5e-34 149.4 128 57.8
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 1.3e-33 148.7 115 61.7
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.7e-33 148.3 120 59.2
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.7e-33 148.3 128 56.2
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 2.9e-33 147.5 131 61.1
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 8.3e-33 146.0 130 53.8
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 1.9e-32 144.8 121 55.4
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 2.4e-32 144.4 114 59.6
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 7.1e-32 142.9 125 59.2
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 1.6e-31 141.7 117 54.7
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 6.0e-31 139.8 125 55.2
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 7.8e-31 139.4 123 54.5
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 1.3e-30 138.7 120 56.7
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 2.3e-30 137.9 118 61.9
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 6.6e-30 136.3 127 58.3
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.1e-29 135.6 117 57.3
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.5e-29 135.2 113 57.5
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 2.5e-29 134.4 117 54.7
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 3.3e-29 134.0 109 53.2
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 3.3e-29 134.0 127 54.3
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 3.3e-29 134.0 114 56.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-29 133.7 114 57.0
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 5.6e-29 133.3 114 57.0
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 5.6e-29 133.3 114 57.0
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 5.6e-29 133.3 114 57.0
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 7.3e-29 132.9 127 54.3
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 9.5e-29 132.5 130 50.0
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 6.2e-28 129.8 119 58.8
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 1.8e-27 128.3 115 53.0
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 2.4e-27 127.9 121 52.1
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 3.1e-27 127.5 107 51.4
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.5e-26 125.2 127 52.8
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 3.4e-26 124.0 108 50.0
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 5.8e-26 123.2 116 50.9
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 9.9e-26 122.5 116 50.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.2e-25 121.3 124 48.4
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 4.9e-25 120.2 109 53.2
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 4.2e-24 117.1 128 49.2
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 5.4e-24 116.7 106 48.1
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 2.1e-23 114.8 109 53.2
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 2.3e-22 111.3 90 51.1
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 6.6e-22 109.8 102 52.0
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 8.1e-20 102.8 111 47.7
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 6.4e-17 93.2 137 43.1
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 4.2e-16 90.5 131 42.7
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 4.2e-16 90.5 107 45.8
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.0e-14 85.9 67 61.2
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 1.7e-14 85.1 110 45.5
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 2.3e-14 84.7 46 71.7
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 6.6e-14 83.2 118 44.1
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 4.5e-10 70.5 108 39.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.7e-09 68.6 122 34.4
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.6e-07 62.0 107 29.9
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.1e-07 61.6 53 52.8
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 4.6e-07 60.5 114 31.6
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 5.1e-06 57.0 36 63.9
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 8.7e-06 56.2 87 34.5


User provided reference genes

Program Settings