Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-170 602.4 318 100.0
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 3.5e-167 591.7 318 98.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.1e-156 555.8 318 89.0
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.7e-134 483.0 271 84.9
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 3.3e-133 478.8 271 83.8
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.6e-132 476.5 271 84.5
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 6.2e-132 474.6 272 83.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 8.0e-132 474.2 270 84.4
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-128 463.4 272 82.0
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.8e-127 457.6 272 80.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 5.0e-126 454.9 311 74.9
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 4.0e-123 445.3 268 78.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 5.8e-122 441.4 315 67.9
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.2e-120 435.6 306 69.9
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.6e-111 405.2 271 69.0
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 5.6e-109 398.3 265 68.3
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 7.3e-109 397.9 271 67.5
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 8.1e-108 394.4 271 67.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.4e-107 393.7 279 68.5
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.4e-107 393.7 316 59.8
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.5e-106 390.2 272 66.9
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.0e-106 389.8 308 59.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 9.9e-106 387.5 268 66.8
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.3e-105 387.1 269 67.3
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.2e-105 386.3 273 64.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 2.9e-105 386.0 269 63.6
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.4e-104 382.9 275 63.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.2e-104 382.5 267 65.5
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.2e-104 382.1 267 65.2
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.2e-103 380.6 271 66.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.2e-103 380.6 275 63.6
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.0e-102 377.5 269 63.2
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.1e-101 374.0 273 63.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.3e-101 372.1 275 64.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 4.3e-101 372.1 276 62.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.4e-99 367.1 269 64.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-98 363.6 275 63.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-98 363.6 275 63.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 2.0e-98 363.2 269 64.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.6e-98 362.8 268 62.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.8e-98 361.7 272 63.2
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.9e-98 360.9 268 63.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-97 360.1 269 63.9
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.9e-97 359.4 204 85.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 7.1e-96 354.8 272 62.5
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.6e-95 353.6 268 64.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.9e-95 351.3 283 60.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.5e-93 347.1 271 58.7
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.3e-93 345.9 265 61.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.4e-93 344.7 271 58.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.3e-92 344.0 268 60.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.8e-92 342.8 264 60.6
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 8.1e-92 341.3 270 60.4
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.4e-91 340.5 266 58.6
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.8e-91 340.1 267 59.9
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-91 340.1 284 59.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 3.1e-91 339.3 264 61.4
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.9e-91 338.2 272 57.4
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.9e-91 338.2 272 61.0
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-90 336.7 272 57.0
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.4e-90 335.9 269 58.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.4e-90 335.9 266 58.3
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.5e-90 335.5 275 56.7
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 5.8e-90 335.1 272 59.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.3e-89 334.0 267 57.3
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.1e-88 330.9 272 55.1
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.4e-88 330.5 272 59.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.9e-88 330.1 274 56.9
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.9e-88 330.1 266 56.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 4.2e-88 328.9 274 56.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.1e-88 328.2 274 56.6
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.6e-87 327.0 271 57.2
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.6e-87 327.0 266 56.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 6.0e-87 325.1 271 57.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 6.0e-87 325.1 270 57.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 6.0e-87 325.1 271 57.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.8e-86 323.6 272 56.6
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.1e-86 322.0 237 62.0
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 6.7e-86 321.6 270 55.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.9e-85 320.1 267 55.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 3.3e-85 319.3 269 54.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 3.3e-85 319.3 275 55.6
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 4.3e-85 318.9 273 55.3
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 9.6e-85 317.8 270 56.3
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.8e-84 316.2 272 54.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 3.7e-84 315.8 265 56.6
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 4.8e-84 315.5 270 56.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 6.2e-84 315.1 267 53.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.1e-83 314.3 271 55.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.4e-83 313.9 272 55.5
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-83 311.6 274 54.7
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.9e-83 311.6 274 54.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.2e-81 306.6 271 51.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.1e-80 304.3 271 54.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.2e-80 302.4 268 51.5
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 4.2e-80 302.4 305 49.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 2.3e-78 296.6 267 51.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 6.7e-78 295.0 268 53.0
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.5e-77 293.9 267 51.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 3.3e-77 292.7 271 52.4
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 3.7e-76 289.3 302 47.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.1e-75 286.2 270 51.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.3e-75 285.4 280 52.1
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 9.0e-75 284.6 267 50.2
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.0e-73 281.2 276 47.8
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.0e-73 278.9 202 64.4
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.0e-73 278.9 274 50.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.2e-72 275.0 270 52.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.1e-71 273.5 203 64.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.1e-71 273.5 203 64.5
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.9e-71 271.6 273 49.1
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.3e-70 270.0 266 46.6
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.1e-69 267.7 269 46.5
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.3e-69 266.2 269 45.7
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.3e-69 266.2 267 46.8
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.1e-67 259.2 198 63.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.2e-66 257.7 269 46.1
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.2e-65 253.4 272 49.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.1e-63 246.9 254 48.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.7e-63 246.5 267 44.6
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.7e-62 241.9 269 45.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.4e-61 238.4 238 49.6
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.6e-58 229.9 213 52.1
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.9e-56 223.8 262 42.7
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 8.0e-55 218.4 242 43.8
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.1e-53 214.5 263 43.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 4.8e-52 209.1 178 55.6
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.6e-50 203.4 268 39.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.1e-48 198.0 172 51.7
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.5e-48 196.8 275 37.5
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.3e-46 190.3 261 37.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 4.0e-46 189.5 264 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.2e-45 188.0 263 38.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.8e-44 183.3 259 40.2
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.3e-44 181.8 268 36.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.5e-42 176.0 263 36.5
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 5.0e-33 146.0 96 75.0
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 6.6e-33 145.6 98 70.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.2e-28 130.6 206 35.0
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.6e-23 114.4 90 55.6
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.6e-23 114.4 128 42.2
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 5.2e-22 109.4 67 73.1
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.0e-19 99.0 203 30.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.0e-17 95.1 71 59.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.0e-17 95.1 71 59.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.0e-17 92.8 131 40.5
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.4e-11 74.7 261 24.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.1e-11 73.2 193 30.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.0e-09 67.0 196 26.5


User provided reference genes

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