Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 4.7e-48 194.1 94 100.0
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 1.9e-41 172.2 94 87.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.0e-26 123.2 93 60.2
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.3e-26 122.1 87 70.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.1e-25 119.8 87 69.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 6.2e-24 114.0 88 63.6
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 6.9e-23 110.5 87 58.6
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 6.9e-23 110.5 92 57.6
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.5e-22 109.4 92 57.6
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.5e-22 109.4 93 54.8
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 5.8e-22 107.5 85 58.8
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 5.8e-22 107.5 86 57.0
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.2e-21 105.5 88 56.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 4.9e-21 104.4 94 55.3
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.9e-20 102.4 90 56.7
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.5e-20 102.1 91 52.7
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 9.3e-20 100.1 88 59.1
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 3.5e-19 98.2 92 50.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 4.6e-19 97.8 86 51.2
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 7.9e-19 97.1 89 56.2
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 1.8e-18 95.9 94 51.1
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 3.0e-18 95.1 83 60.2
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.8e-16 87.8 87 55.2
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 1.8e-15 85.9 77 51.9
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.3e-15 84.3 81 50.6
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 5.3e-15 84.3 82 51.2
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 6.9e-15 84.0 84 52.4
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.0e-14 82.4 84 51.2
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.4e-14 81.6 84 50.0
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.3e-13 79.7 81 50.6
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.7e-13 79.3 95 43.2
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 2.2e-13 79.0 78 50.0
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-13 78.6 77 45.5
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.1e-12 76.6 93 45.2
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-12 75.5 82 50.0
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 2.5e-12 75.5 88 39.8
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.2e-12 75.1 82 50.0
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 4.2e-12 74.7 78 48.7
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 7.2e-12 73.9 80 52.5
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.1e-11 72.4 81 46.9
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 4.6e-11 71.2 82 47.6
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 6.1e-11 70.9 81 46.9
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.1e-11 70.9 81 46.9
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 6.1e-11 70.9 81 43.2
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.4e-10 69.7 91 38.5
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 1.8e-10 69.3 73 46.6
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.3e-10 68.9 80 46.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 3.0e-10 68.6 95 38.9
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.0e-10 68.6 81 44.4
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 3.0e-10 68.6 78 43.6
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 6.7e-10 67.4 79 40.5
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-09 66.6 78 43.6
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-09 66.6 79 44.3
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 2.0e-09 65.9 47 61.7
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 2.5e-09 65.5 84 35.7
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 3.3e-09 65.1 79 35.4
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 9.7e-09 63.5 81 39.5
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.3e-08 63.2 79 41.8
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 1.7e-08 62.8 47 59.6
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.8e-08 62.0 89 31.5
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 2.8e-08 62.0 82 32.9
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 3.7e-08 61.6 73 43.8
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 4.8e-08 61.2 104 33.7
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 4.8e-08 61.2 80 37.5
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 4.8e-08 61.2 78 35.9
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 6.3e-08 60.8 81 42.0
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 1.1e-07 60.1 76 43.4
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 1.1e-07 60.1 76 43.4
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 1.1e-07 60.1 76 43.4
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 1.1e-07 60.1 76 43.4
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 1.1e-07 60.1 76 43.4
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.1e-07 60.1 76 43.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.4e-07 59.7 65 40.0
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.8e-07 59.3 58 48.3
A06p03910 Brassica napus HOM05D009461 ORTHO05D002252 1.8e-07 59.3 73 43.8
BraA06t23599Z Brassica rapa HOM05D009461 ORTHO05D002252 1.8e-07 59.3 73 43.8
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.8e-07 59.3 83 39.8
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 2.4e-07 58.9 72 44.4
BolC6t35534H Brassica oleracea HOM05D009461 ORTHO05D002252 2.4e-07 58.9 72 44.4
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.4e-07 58.9 73 39.7
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.4e-07 58.9 73 39.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.4e-07 58.9 69 39.1
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 3.1e-07 58.5 76 43.4
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 3.1e-07 58.5 76 43.4
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 3.1e-07 58.5 88 37.5
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.1e-07 58.5 58 55.2
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.1e-07 58.5 95 37.9
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 5.3e-07 57.8 49 49.0
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 6.9e-07 57.4 72 44.4
AL1G56180 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.5e-06 56.2 71 45.1
AL1G56260 Arabidopsis lyrata HOM05D009461 ORTHO05D002252 1.5e-06 56.2 71 45.1
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.5e-06 56.2 94 35.1
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.0e-06 55.8 82 35.4
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 2.0e-06 55.8 85 36.5
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.6e-06 55.5 85 36.5
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.4e-06 55.1 85 35.3
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 4.5e-06 54.7 82 39.0
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 4.5e-06 54.7 82 39.0
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 5.9e-06 54.3 71 42.3
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 7.7e-06 53.9 80 40.0


User provided reference genes

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