Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 3.5e-53 211.5 114 100.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 7.8e-45 183.7 115 86.1
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 8.6e-44 180.3 115 84.3
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.5e-43 178.7 110 85.5
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.3e-43 178.3 115 83.5
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 84.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 80.7
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 81.6
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 4.7e-42 174.5 115 81.7
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 79.5
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 79.8
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 79.8
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 3.1e-41 171.8 110 80.0
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 77.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 78.1
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.2e-40 169.9 112 77.7
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 77.2
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.5e-40 169.5 110 77.3
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 77.2
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 77.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 77.7
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 76.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 76.3
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 77.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 77.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 75.4
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 7.5e-40 167.2 110 78.2
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 78.1
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 9.8e-40 166.8 112 77.7
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 76.3
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 75.0
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.2e-39 165.6 110 78.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 76.3
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 76.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.7e-39 164.9 110 78.2
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.9e-39 164.5 112 76.8
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 74.6
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-38 163.3 115 75.7
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 73.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 73.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 73.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 73.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 73.9
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 71.9
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 71.9
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.4e-38 162.2 109 77.1
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.4e-38 162.2 114 74.6
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.4e-38 162.2 115 73.9
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 2.4e-38 162.2 112 73.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.4e-38 162.2 112 75.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 75.4
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 3.2e-38 161.8 114 71.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 74.6
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 73.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.4e-38 161.0 106 77.4
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 71.9
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 7.1e-38 160.6 110 76.4
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 7.1e-38 160.6 115 73.0
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 9.2e-38 160.2 108 75.9
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 110 75.5
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 110 75.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 9.2e-38 160.2 110 76.4
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 77.2
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 72.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 73.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 73.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 74.1
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.7e-37 158.7 104 79.8
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.5e-37 158.3 110 75.5
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 4.6e-37 157.9 112 71.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.6e-37 157.9 110 74.5
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 6.0e-37 157.5 111 76.6
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.8e-37 157.1 110 74.5
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 7.8e-37 157.1 110 74.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.0e-36 156.8 114 71.1
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.3e-36 156.4 114 72.8
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.3e-36 155.6 113 70.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 3.0e-36 155.2 113 69.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 5.1e-36 154.5 114 72.8
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 6.6e-36 154.1 112 71.4
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 6.6e-36 154.1 114 69.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.6e-36 154.1 114 70.2
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 8.6e-36 153.7 114 71.9
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 8.6e-36 153.7 104 77.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.1e-35 153.3 114 71.9
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.1e-35 153.3 114 71.9
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.1e-35 153.3 113 74.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.1e-35 153.3 108 73.1
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.9e-35 152.5 145 59.3
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.5e-35 152.1 112 69.6
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 2.5e-35 152.1 114 68.4
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.6e-35 151.0 114 71.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.6e-35 151.0 112 68.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.6e-34 148.3 110 70.9
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 3.6e-34 148.3 142 59.9
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 6.2e-34 147.5 110 73.6
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.4e-33 146.4 110 72.7
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.4e-33 146.4 110 72.7
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.4e-33 146.4 110 72.7
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.4e-33 146.4 146 58.2
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-33 146.0 110 72.7
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 2.3e-33 145.6 112 68.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.1e-33 145.2 110 71.8
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 6.8e-33 144.1 110 71.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.4e-32 141.7 114 67.5
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.8e-32 141.0 112 66.1
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.2e-31 139.0 80 88.8
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.8e-31 138.3 110 66.4
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 7.1e-30 134.0 77 88.3
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 7.1e-30 134.0 80 85.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 9.2e-30 133.7 84 82.1
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.6e-29 132.9 77 89.6
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.6e-29 132.9 108 64.8
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 3.5e-29 131.7 83 81.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 3.5e-29 131.7 83 81.9
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 7.8e-29 130.6 109 63.3
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.7e-28 129.4 77 85.7
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.9e-28 128.3 91 71.4
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.3e-27 124.0 94 72.3
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-26 123.2 96 70.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-24 116.7 65 89.2
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.4e-24 114.8 77 77.9
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.7e-23 112.8 72 77.8
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.4e-22 109.0 77 68.8
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.7e-20 102.8 112 50.9
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.3e-20 102.4 106 52.8
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 5.1e-20 101.3 109 58.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 8.7e-20 100.5 72 70.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.4e-17 92.4 114 48.2
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.1e-17 92.0 102 50.0
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 6.9e-17 90.9 73 67.1
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.8e-16 87.8 106 45.3
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.9e-16 87.0 90 50.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.7e-15 86.3 59 74.6
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 2.2e-15 85.9 73 64.4
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.2e-15 85.9 62 67.7
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.9e-15 84.7 100 50.0
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 8.4e-15 84.0 51 82.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 7.1e-14 80.9 106 46.2
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 9.3e-14 80.5 108 49.1
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.1e-13 79.3 95 51.6
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.0e-12 77.0 57 70.2
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 76.3 50 76.0
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.0e-12 75.5 43 86.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.0e-12 75.5 45 82.2
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 51 74.5
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 2.5e-11 72.4 43 81.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.3e-11 72.0 104 43.3
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 5.6e-11 71.2 104 41.3
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 5.6e-11 71.2 43 79.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.4e-11 70.9 62 54.8
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 4.8e-10 68.2 91 47.3
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 4.0e-09 65.1 55 61.8
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 2.0e-08 62.8 95 45.3
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 5.8e-08 61.2 56 64.3
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.6e-08 60.8 35 82.9
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-07 60.1 59 47.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 2.2e-07 59.3 95 44.2


User provided reference genes

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