Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 1.3e-302 1042.3 540 100.0
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 1.4e-248 862.8 545 83.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 2.6e-247 858.6 548 82.7
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 1.4e-245 852.8 544 82.5
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 4.5e-244 847.8 544 82.7
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 1.5e-234 816.2 546 79.7
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 2.0e-231 805.8 545 77.4
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 6.4e-230 800.8 546 77.7
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 3.9e-227 791.6 541 75.8
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.4e-216 756.5 545 72.7
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 1.8e-216 756.1 541 72.8
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.5e-215 753.1 544 72.1
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 9.9e-215 750.4 440 86.1
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 4.9e-214 748.0 532 72.4
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 6.4e-214 747.7 511 75.7
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 1.2e-212 743.4 545 71.6
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 6.0e-212 741.1 545 71.4
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 3.9e-211 738.4 551 70.8
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 5.6e-210 734.6 463 80.8
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 2.8e-209 732.3 471 77.5
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 3.1e-208 728.8 474 75.5
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 4.0e-208 728.4 523 71.1
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.0e-208 728.4 525 71.6
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 1.5e-207 726.5 541 69.3
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 2.0e-207 726.1 546 69.8
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 7.6e-207 724.2 526 71.5
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.9e-206 722.2 545 69.9
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 6.4e-206 721.1 555 69.7
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 1.9e-205 719.5 546 69.6
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 3.2e-205 718.8 532 69.2
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 5.4e-205 718.0 546 68.7
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 7.1e-205 717.6 471 76.4
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 1.6e-204 716.5 471 76.0
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 2.1e-204 716.1 541 69.1
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 3.5e-204 715.3 497 72.4
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 1.0e-203 713.8 545 68.3
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 5.1e-203 711.4 549 67.6
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 5.1e-203 711.4 469 74.4
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.5e-202 709.9 548 67.5
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.9e-202 709.5 542 68.1
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 1.9e-202 709.5 543 68.1
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 2.5e-202 709.1 549 67.4
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 3.3e-202 708.8 549 67.4
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 2.1e-201 706.1 540 68.0
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.1e-201 706.1 542 68.8
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 9.0e-200 700.7 547 65.8
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 9.0e-200 700.7 526 70.0
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 4.5e-199 698.4 497 70.8
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 2.2e-198 696.0 478 73.6
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 6.4e-198 694.5 459 78.2
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 3.2e-197 692.2 467 73.4
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 2.7e-196 689.1 531 66.7
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 2.7e-196 689.1 467 73.0
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 2.3e-195 686.0 577 65.2
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 2.3e-195 686.0 552 66.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 3.9e-195 685.3 541 64.5
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 3.9e-195 685.3 540 65.9
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 5.1e-195 684.9 505 69.7
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 6.7e-195 684.5 527 66.6
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.5e-194 683.3 533 67.7
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 2.5e-194 682.6 468 72.2
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 1.4e-192 676.8 517 68.5
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.2e-191 673.7 539 65.5
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 9.9e-191 670.6 446 74.2
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 1.4e-189 666.8 544 62.3
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 6.0e-188 661.4 527 61.9
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 3.9e-187 658.7 484 68.8
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.3e-185 653.7 471 69.6
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 4.8e-185 651.7 549 61.6
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 1.1e-184 650.6 519 64.0
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 4.0e-184 648.7 551 61.7
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 4.0e-184 648.7 473 68.1
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 5.3e-184 648.3 485 64.5
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 6.9e-184 647.9 519 63.8
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 1.2e-183 647.1 556 60.4
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.0e-183 646.4 546 61.0
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.5e-183 645.2 542 64.6
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.3e-182 643.7 476 66.6
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 3.8e-182 642.1 552 62.9
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 3.8e-182 642.1 471 67.7
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 1.1e-181 640.6 548 61.5
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 1.9e-181 639.8 469 67.8
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 2.1e-180 636.3 489 65.4
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 3.9e-179 632.1 575 58.1
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 8.7e-179 630.9 472 66.5
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 2.1e-172 609.8 542 58.7
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 7.4e-170 601.3 443 67.0
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.7e-169 600.1 522 60.0
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 2.4e-168 596.3 452 65.7
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 7.7e-167 591.3 452 65.0
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 1.3e-166 590.5 543 59.9
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 6.9e-160 568.2 477 61.6
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 5.9e-159 565.1 524 55.7
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 5.7e-154 548.5 453 58.3
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 5.3e-152 542.0 488 60.5
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 1.7e-150 537.0 373 71.3
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 2.9e-150 536.2 538 55.6
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 5.5e-149 531.9 488 58.2
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.2e-140 504.2 415 63.4
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 1.4e-136 490.7 388 62.9
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 5.0e-134 482.3 469 50.7
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 8.0e-132 474.9 380 65.0
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 1.3e-129 467.6 463 50.3
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.5e-125 454.1 518 45.8
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.6e-124 449.5 529 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 4.7e-124 449.1 474 48.7
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.3e-117 425.2 423 58.2
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 3.6e-116 422.9 475 45.3
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 4.7e-108 396.0 439 44.4
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 4.3e-77 293.1 498 34.5
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 8.4e-65 252.3 425 34.6
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 5.9e-58 229.6 136 87.5
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 1.3e-57 228.4 151 78.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 1.1e-51 208.8 382 40.6
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 2.2e-41 174.5 139 66.2
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 1.4e-38 165.2 107 77.6
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.8e-38 164.9 278 39.9
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 9.1e-35 152.5 92 85.9
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 3.6e-31 140.6 93 82.8
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 3.0e-30 137.5 467 23.6
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.7e-23 114.4 68 80.9
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 6.1e-23 113.2 113 60.2
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 4.4e-21 107.1 210 36.2
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 1.1e-19 102.4 204 33.3
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 2.4e-19 101.3 229 32.3
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 2.8e-15 87.8 119 47.1
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 6.3e-12 76.6 77 55.8
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 7.3e-08 63.2 51 56.9
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 5.2e-06 57.0 347 22.5


User provided reference genes

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