Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.0e-87 325.9 184 100.0
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 2.6e-74 282.3 211 69.2
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 1.1e-69 266.9 211 64.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 7.3e-69 264.2 211 64.0
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 3.6e-68 261.9 211 63.5
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 4.7e-68 261.5 211 64.0
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.8e-67 259.6 211 63.5
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 3.1e-67 258.8 211 63.5
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 5.2e-67 258.1 211 63.0
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.0e-66 256.1 211 62.6
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.4e-66 255.0 216 62.5
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.7e-65 253.1 213 62.0
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.7e-65 253.1 213 62.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.9e-65 252.3 213 62.0
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 7.1e-64 247.7 211 61.6
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.6e-61 237.3 210 58.1
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.3e-60 236.9 210 57.6
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.1e-60 236.1 210 57.6
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-59 233.8 213 56.3
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 4.0e-59 231.9 213 55.9
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.0e-58 229.6 211 55.5
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.4e-58 228.8 210 54.8
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 4.4e-58 228.4 212 54.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 4.4e-58 228.4 213 54.9
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 5.8e-58 228.0 211 55.0
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.6e-58 227.6 213 54.5
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.3e-57 226.9 213 55.4
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.7e-57 226.5 198 57.1
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.7e-57 226.5 215 53.5
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 2.2e-57 226.1 211 55.0
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 2.2e-57 226.1 213 54.5
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 3.8e-57 225.3 213 54.5
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.9e-57 224.9 213 54.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 8.4e-57 224.2 213 54.9
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.1e-56 223.8 213 54.5
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.4e-56 223.4 209 55.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 5.4e-56 221.5 213 52.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 5.4e-56 221.5 217 53.5
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 7.1e-56 221.1 212 54.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 7.1e-56 221.1 213 53.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 7.1e-56 221.1 213 53.5
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 7.1e-56 221.1 213 53.5
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.2e-55 220.3 213 53.5
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.6e-55 219.9 213 53.1
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.7e-55 219.2 209 53.6
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.5e-55 218.8 213 52.6
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 4.6e-55 218.4 213 53.1
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 4.6e-55 218.4 213 53.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 4.6e-55 218.4 213 53.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 7.9e-55 217.6 213 52.6
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.3e-54 216.9 212 51.4
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.7e-54 216.5 213 51.2
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 2.3e-54 216.1 213 51.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.3e-54 216.1 213 53.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.6e-54 214.5 213 50.2
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 8.7e-54 214.2 208 52.4
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 8.7e-54 214.2 213 50.7
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.5e-53 213.4 213 51.2
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 2.5e-53 212.6 213 51.6
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 4.3e-53 211.8 213 50.2
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 5.6e-53 211.5 213 51.6
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.6e-53 211.5 213 49.8
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.6e-53 210.7 136 72.8
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.1e-52 209.5 213 50.7
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.8e-52 209.1 208 51.0
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 2.8e-52 209.1 213 50.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.2e-52 208.0 213 48.8
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.4e-51 206.8 211 50.7
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.4e-51 206.8 213 50.7
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.4e-51 206.1 199 53.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.1e-51 205.7 210 49.0
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.1e-51 205.7 210 51.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 4.0e-51 205.3 211 49.8
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 6.9e-51 204.5 213 48.4
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.0e-51 204.1 123 76.4
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.2e-50 203.8 210 48.1
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.2e-50 203.8 214 47.2
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.2e-50 203.8 211 47.9
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.2e-50 203.8 214 47.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.2e-50 203.8 214 47.2
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.2e-50 203.8 203 50.2
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.0e-50 203.0 213 47.4
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.0e-50 203.0 168 58.9
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.6e-50 202.6 213 46.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 2.6e-50 202.6 211 47.9
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.6e-50 202.6 168 60.7
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 5.8e-50 201.4 213 47.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 5.8e-50 201.4 206 49.5
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.3e-49 200.3 213 49.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.8e-49 198.7 213 46.9
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 4.9e-49 198.4 168 56.0
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.9e-49 198.4 213 48.8
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.9e-49 198.4 213 46.0
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.4e-49 198.0 168 57.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.4e-48 196.1 204 49.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 3.2e-48 195.7 199 50.8
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 3.5e-47 192.2 208 46.6
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 4.6e-47 191.8 212 47.6
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 7.9e-47 191.0 215 48.8
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.9e-46 188.7 168 53.6
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.9e-46 188.7 215 47.9
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.5e-45 186.8 212 48.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.7e-44 182.2 214 46.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 4.8e-44 181.8 168 54.8
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.1e-44 181.0 205 49.3
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.4e-43 180.3 203 47.3
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 7.6e-42 174.5 203 45.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.0e-41 174.1 210 47.6
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.9e-40 169.9 171 50.9
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 2.1e-39 166.4 168 50.6
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 7.9e-39 164.5 213 43.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.1e-35 154.1 214 41.1
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.4e-34 149.1 137 54.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.0e-33 145.2 211 40.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.9e-32 143.3 125 59.2
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 7.4e-29 131.3 139 48.9
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 7.4e-29 131.3 216 36.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.3e-28 130.6 209 38.8
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.7e-28 129.0 155 46.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 2.4e-27 126.3 82 76.8
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.1e-27 125.6 183 43.7
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.2e-24 115.9 79 65.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 4.6e-23 112.1 109 54.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.4e-18 95.9 177 33.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.0e-17 94.4 63 66.7
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-15 87.4 54 72.2
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.5e-13 80.5 164 35.4
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 7.4e-13 78.2 151 35.1
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 7.0e-11 71.6 69 50.7
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 7.7e-10 68.2 182 31.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.7e-09 67.0 45 64.4
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.2e-08 62.4 32 84.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 9.4e-08 61.2 134 30.6
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.2e-07 60.8 32 81.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-06 56.2 70 42.9


User provided reference genes

Program Settings