Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 9.6e-268 926.4 518 100.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 7.1e-162 574.7 515 63.9
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.9e-151 540.0 516 61.2
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.3e-139 500.7 518 60.8
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 2.2e-139 500.0 608 53.1
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.1e-137 491.9 514 57.8
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.7e-134 483.8 564 54.3
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 2.2e-134 483.4 569 54.5
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.0e-131 474.6 569 52.7
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.6e-121 440.7 570 51.4
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 9.7e-119 431.4 657 45.5
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.2e-115 420.2 582 51.7
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 3.4e-111 406.4 377 61.3
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 2.4e-109 400.2 529 48.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 7.0e-109 398.7 577 47.7
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.7e-99 367.5 623 44.3
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 2.3e-99 367.1 561 44.6
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 6.1e-97 359.0 352 60.5
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.9e-90 337.4 527 43.6
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.9e-90 337.4 518 45.4
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 4.7e-89 332.8 532 42.7
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 9.5e-82 308.5 535 40.4
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 9.5e-82 308.5 682 38.0
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 2.6e-79 300.4 518 42.1
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 4.9e-78 296.2 529 40.3
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 8.3e-78 295.4 528 40.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 4.1e-77 293.1 474 42.6
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 4.1e-77 293.1 544 39.2
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 7.3e-74 282.3 527 39.1
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 9.5e-74 282.0 527 38.7
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 2.1e-73 280.8 510 39.4
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.1e-73 280.8 535 39.4
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.8e-72 277.7 434 42.9
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 5.2e-72 276.2 547 38.2
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 1.1e-69 268.5 523 39.4
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 7.8e-68 262.3 530 38.5
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 1.3e-67 261.5 542 36.2
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 6.6e-67 259.2 535 37.0
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.1e-66 258.5 410 42.7
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.1e-66 258.5 540 36.5
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.1e-66 258.5 413 41.9
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.5e-66 257.3 462 40.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 3.3e-66 256.9 553 37.1
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 5.6e-66 256.1 462 39.8
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 7.3e-66 255.8 462 40.7
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 7.3e-66 255.8 528 38.3
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 8.1e-65 252.3 359 44.8
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.8e-64 251.1 401 41.9
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 3.1e-64 250.4 472 40.7
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 6.9e-64 249.2 394 42.1
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 3.4e-63 246.9 562 34.9
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 4.4e-63 246.5 533 37.9
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.4e-61 241.5 542 35.4
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 3.2e-61 240.4 525 36.2
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 3.5e-60 236.9 525 37.7
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 3.5e-60 236.9 500 36.4
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 6.0e-60 236.1 533 37.3
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.7e-59 234.6 418 40.9
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 6.6e-59 232.6 535 37.4
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 2.1e-57 227.6 519 35.3
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 2.1e-57 227.6 524 36.1
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 2.1e-57 227.6 552 35.9
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 2.1e-57 227.6 523 38.6
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 3.6e-57 226.9 528 36.2
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 4.8e-57 226.5 515 35.9
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 8.1e-57 225.7 521 36.9
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.1e-56 225.3 513 34.7
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.4e-56 224.2 480 37.3
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.0e-56 223.4 480 36.9
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 9.9e-55 218.8 455 36.9
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.3e-54 218.4 471 38.0
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.7e-54 218.0 408 37.5
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.9e-54 217.2 560 35.5
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 3.8e-54 216.9 517 35.8
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 6.4e-54 216.1 519 34.1
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 6.4e-54 216.1 479 36.5
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 3.2e-53 213.8 527 35.3
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.1e-52 211.1 524 35.3
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 2.1e-52 211.1 411 38.9
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 6.0e-52 209.5 360 41.1
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 6.7e-51 206.1 475 32.8
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.9e-50 204.5 404 38.1
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.5e-50 204.1 405 36.0
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 4.3e-50 203.4 513 34.9
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 4.8e-49 199.9 506 33.8
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 8.1e-49 199.1 553 31.5
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 5.3e-48 196.4 512 32.4
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 3.4e-47 193.7 415 38.6
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 9.9e-47 192.2 604 31.6
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 9.9e-47 192.2 500 35.6
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.1e-45 188.7 528 32.0
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.2e-45 186.8 616 29.9
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 7.1e-45 186.0 551 31.2
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 8.7e-43 179.1 617 30.0
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.9e-42 177.9 388 36.6
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 3.3e-42 177.2 617 30.0
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 3.3e-42 177.2 617 30.0
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 6.2e-41 172.9 385 35.6
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.1e-40 172.2 618 30.1
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.9e-38 164.1 560 30.0
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 4.9e-38 163.3 564 29.8
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.5e-38 162.9 265 41.1
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 6.5e-38 162.9 509 32.6
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.3e-33 148.7 583 27.4
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 2.9e-30 137.5 517 28.8
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 5.5e-29 133.3 670 27.2
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 3.9e-27 127.1 258 36.8
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.3e-26 124.0 430 29.5
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.7e-25 121.7 442 26.5
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.5e-23 115.2 244 36.1
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.2e-22 111.3 566 26.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 3.8e-22 110.5 259 34.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 9.4e-21 105.9 485 27.8
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.9e-13 81.6 106 50.9
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.3e-11 74.7 252 29.4
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 5.2e-11 73.6 73 49.3


User provided reference genes

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