Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 7.6e-182 641.0 485 100.0
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.1e-119 434.5 504 72.6
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 6.5e-117 425.2 490 75.1
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 5.5e-116 422.2 488 73.8
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 5.2e-114 415.6 508 75.4
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.2e-110 404.4 500 74.4
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.7e-109 400.6 497 75.9
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 6.5e-109 398.7 493 76.3
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 3.7e-104 382.9 400 79.0
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 8.6e-101 371.7 444 76.1
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 8.0e-99 365.2 442 75.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 2.9e-96 356.7 519 67.6
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.4e-95 354.4 525 66.9
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.3e-93 347.1 455 71.0
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 2.3e-93 347.1 490 66.9
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.5e-92 343.6 490 65.7
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 9.5e-92 341.7 481 68.2
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 3.6e-91 339.7 490 65.7
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.6e-91 339.7 490 65.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.7e-91 339.3 490 65.7
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 6.2e-91 339.0 490 65.5
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.1e-90 338.2 456 71.7
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.1e-90 338.2 468 70.3
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.3e-90 337.0 456 68.4
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 6.8e-90 335.5 487 67.6
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 3.4e-89 333.2 487 67.4
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 5.8e-89 332.4 491 66.4
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.7e-88 330.9 461 71.1
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.7e-88 329.7 476 68.1
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 1.1e-87 328.2 489 67.3
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 7.0e-87 325.5 494 66.2
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.2e-86 324.7 519 63.6
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.1e-86 323.9 519 63.2
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 3.5e-86 323.2 496 65.7
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.5e-86 323.2 519 63.6
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.3e-85 321.2 496 66.7
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.9e-85 319.7 529 60.5
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 8.6e-85 318.5 472 66.1
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.3e-84 316.6 470 66.0
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 3.3e-84 316.6 506 67.4
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 9.5e-84 315.1 471 66.5
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.1e-83 313.9 453 67.1
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 6.2e-83 312.4 476 55.7
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.4e-82 311.2 550 59.8
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 8.9e-82 308.5 488 66.0
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 7.5e-81 305.4 497 64.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.9e-80 303.5 500 62.6
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 4.9e-80 302.8 510 61.2
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 6.4e-80 302.4 503 64.0
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 6.4e-80 302.4 470 64.9
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.4e-79 301.2 471 68.6
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.4e-79 300.4 507 64.1
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 7.1e-79 298.9 497 61.8
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.2e-78 298.1 486 66.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.6e-78 297.7 350 80.3
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 2.7e-78 297.0 468 63.2
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 6.0e-78 295.8 449 61.5
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.7e-77 294.3 467 64.9
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 8.6e-77 292.0 328 83.2
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 8.6e-77 292.0 520 62.3
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 7.3e-76 288.9 481 65.7
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 8.1e-75 285.4 474 63.5
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.0e-74 283.1 491 60.1
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 8.9e-74 282.0 449 62.8
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.2e-73 281.6 486 58.8
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.0e-73 280.8 399 67.4
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.0e-73 280.8 474 62.9
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.9e-72 276.9 466 61.2
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 4.9e-72 276.2 475 64.4
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.1e-71 275.0 469 60.6
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.4e-71 274.6 511 54.8
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.9e-71 274.2 503 58.8
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 7.1e-71 272.3 493 57.6
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.5e-70 270.0 476 61.8
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.9e-69 266.5 476 59.5
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.9e-69 266.5 463 63.9
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 5.1e-69 266.2 483 61.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-68 265.0 400 69.2
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 3.6e-67 260.0 470 61.1
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 4.7e-67 259.6 455 62.4
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.8e-66 257.7 456 61.8
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 1.8e-66 257.7 460 63.5
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 7.6e-65 252.3 506 58.5
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 9.9e-65 251.9 408 65.4
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 2.9e-64 250.4 490 60.2
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.4e-63 248.1 498 58.8
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 2.1e-62 244.2 489 54.6
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 7.8e-62 242.3 396 61.9
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.7e-61 241.1 523 53.5
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.3e-60 236.9 292 79.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 6.2e-59 232.6 483 58.6
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 3.8e-56 223.4 347 64.0
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.1e-55 221.9 482 55.8
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.4e-55 221.5 440 57.3
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.5e-52 211.5 336 71.7
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.6e-51 208.0 292 78.4
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.4e-50 204.1 395 61.3
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.3e-45 187.6 443 56.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 5.6e-44 183.0 214 56.1
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 8.2e-43 179.1 292 75.0
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 9.0e-42 175.6 299 52.8
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 4.9e-40 169.9 224 82.6
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.2e-38 165.2 290 75.2
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.3e-37 161.8 473 30.2
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.8e-37 161.4 323 45.5
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 3.1e-34 150.6 325 63.7
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.1e-34 150.6 486 52.9
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 3.0e-29 134.0 228 75.0
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 7.4e-28 129.4 119 70.6
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.0e-25 121.3 145 49.0
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.9e-23 114.8 96 80.2
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 7.7e-17 92.8 319 28.2
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 2.9e-16 90.9 378 47.4
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.6e-14 85.1 328 51.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.0e-13 82.4 55 72.7
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.3e-13 81.3 323 55.1
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.8e-11 74.3 84 40.5
VMungo1080G1759 Vigna mungo HOM05D006454 ORTHO05D008024 2.0e-09 68.2 79 54.4
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 6.5e-08 63.2 119 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.6e-06 58.5 113 27.4


User provided reference genes

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