Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 3.4e-69 265.4 188 100.0
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.7e-17 93.6 108 42.6
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-15 87.4 156 51.9
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 6.2e-15 85.1 105 42.9
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 3.1e-14 82.8 105 44.8
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 1.5e-13 80.5 103 41.7
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 1.5e-13 80.5 166 51.8
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 2.0e-13 80.1 96 44.8
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 2.9e-12 76.3 97 41.2
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 2.9e-12 76.3 158 49.4
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 8.4e-12 74.7 96 40.6
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 1.9e-11 73.6 106 40.6
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 2.4e-11 73.2 193 54.9
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 5.4e-11 72.0 107 42.1
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 7.1e-11 71.6 70 45.7
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 9.3e-11 71.2 156 50.0
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.2e-10 70.9 98 42.9
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.2e-10 70.9 98 42.9
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 1.6e-10 70.5 65 47.7
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 2.1e-10 70.1 101 39.6
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 2.7e-10 69.7 86 47.7
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 3.5e-10 69.3 99 45.5
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 3.5e-10 69.3 100 42.0
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 4.6e-10 68.9 98 40.8
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 7.9e-10 68.2 111 36.0
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 7.9e-10 68.2 102 41.2
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.3e-09 67.4 96 42.7
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 1.3e-09 67.4 96 39.6
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 3.0e-09 66.2 96 40.6
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 3.9e-09 65.9 95 38.9
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 3.9e-09 65.9 95 40.0
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 5.1e-09 65.5 97 36.1
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 6.7e-09 65.1 98 37.8
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 6.7e-09 65.1 95 38.9
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.5e-08 63.9 104 38.5
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 2.5e-08 63.2 42 54.8
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 2.5e-08 63.2 68 45.6
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 3.3e-08 62.8 99 40.4
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 3.3e-08 62.8 95 37.9
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.3e-08 62.8 96 34.4
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 4.3e-08 62.4 95 35.8
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 4.3e-08 62.4 98 37.8
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 4.3e-08 62.4 47 53.2
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 5.6e-08 62.0 97 39.2
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 5.6e-08 62.0 69 39.1
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 7.4e-08 61.6 91 40.7
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 1.3e-07 60.8 92 37.0
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 1.3e-07 60.8 96 37.5
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.6e-07 60.5 96 39.6
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.6e-07 60.5 96 39.6
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.6e-07 60.5 97 36.1
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 2.1e-07 60.1 100 36.0
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 2.8e-07 59.7 80 38.8
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 4.8e-07 58.9 47 51.1
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 6.2e-07 58.5 106 38.7
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 6.2e-07 58.5 96 38.5
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 6.2e-07 58.5 106 37.7
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 6.2e-07 58.5 89 32.6
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.1e-06 57.8 54 48.1
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 3.1e-06 56.2 52 48.1
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 3.1e-06 56.2 106 33.0
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 3.1e-06 56.2 47 46.8
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 5.3e-06 55.5 85 37.6
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 5.3e-06 55.5 95 34.7
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 9.0e-06 54.7 104 31.7
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 9.0e-06 54.7 107 34.6
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 9.0e-06 54.7 45 48.9


User provided reference genes

Program Settings