Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 6.2e-241 837.0 418 100.0
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 5.8e-138 495.0 427 64.4
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 1.8e-131 473.4 427 63.7
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.3e-129 467.2 389 64.5
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.8e-129 465.7 397 65.5
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.3e-125 452.6 398 63.3
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 1.2e-111 407.5 386 59.8
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 9.6e-109 397.9 479 52.8
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.3e-105 387.5 486 52.5
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 3.4e-98 362.8 381 58.3
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.8e-94 350.5 443 48.5
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.5e-93 347.4 462 48.5
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 4.8e-92 342.4 436 48.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.1e-91 341.3 444 47.7
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.8e-91 340.5 435 48.7
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 2.0e-90 337.0 439 49.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 3.4e-90 336.3 492 45.1
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 1.7e-89 334.0 402 49.8
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.7e-89 334.0 243 71.6
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.7e-89 334.0 457 48.1
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 3.8e-89 332.8 384 50.8
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.9e-88 330.5 458 46.3
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.5e-88 330.1 431 48.7
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 4.2e-88 329.3 458 46.1
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.0e-86 323.2 381 49.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 8.8e-86 321.6 391 50.6
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.4e-85 319.3 392 50.5
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 2.8e-84 316.6 393 50.1
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.1e-83 314.7 443 44.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.0e-82 310.5 423 46.8
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.6e-82 310.1 392 48.5
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.0e-81 308.1 387 49.4
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.3e-81 307.8 389 46.5
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 4.2e-80 302.8 385 47.8
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 5.5e-80 302.4 389 45.2
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 7.2e-80 302.0 372 47.3
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.6e-79 300.8 389 45.5
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.3e-78 297.0 445 43.1
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 6.7e-78 295.4 400 46.0
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 6.7e-78 295.4 385 44.4
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 8.8e-78 295.0 424 46.7
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.6e-77 293.5 375 45.9
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.3e-77 293.1 433 45.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 4.8e-76 289.3 499 41.5
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.4e-75 287.7 457 41.6
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 1.8e-75 287.3 399 43.4
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.4e-75 287.0 398 45.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.6e-74 284.3 443 42.7
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.3e-73 281.2 392 45.2
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.7e-73 280.8 386 45.6
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.9e-73 280.0 381 44.9
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.9e-73 280.0 370 47.3
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 5.0e-73 279.3 398 45.7
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 5.0e-73 279.3 382 44.8
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 5.0e-73 279.3 380 45.3
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.5e-72 277.7 382 44.2
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.9e-72 277.3 390 41.8
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.9e-72 277.3 381 45.9
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.2e-72 276.6 405 44.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.2e-72 276.2 364 45.6
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 4.2e-72 276.2 400 43.8
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 5.5e-72 275.8 382 44.8
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 5.5e-72 275.8 382 44.5
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 5.5e-72 275.8 396 44.2
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 7.2e-72 275.4 382 43.7
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 7.2e-72 275.4 392 45.2
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.1e-71 273.9 396 43.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.1e-71 273.9 396 43.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 3.6e-71 273.1 393 43.8
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 4.7e-71 272.7 370 44.9
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 8.0e-71 271.9 382 44.5
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.4e-70 271.2 382 44.8
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.0e-70 269.6 390 44.4
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.3e-69 266.5 385 41.8
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 7.5e-69 265.4 373 44.8
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.7e-68 264.2 397 43.6
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 3.7e-68 263.1 440 40.9
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 6.3e-68 262.3 367 46.0
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 6.3e-68 262.3 206 66.0
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.0e-67 258.8 390 42.8
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.5e-66 256.5 292 55.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 5.0e-65 252.7 427 38.9
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.2e-64 248.8 379 43.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 2.1e-63 247.3 381 40.7
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.7e-63 246.9 361 44.3
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 3.7e-60 236.5 375 41.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 4.8e-60 236.1 384 41.1
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-59 235.0 382 39.8
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-59 233.8 382 40.6
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.2e-58 231.5 396 38.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.7e-57 227.6 376 39.9
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.1e-55 220.7 567 33.3
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 8.0e-55 218.8 484 32.9
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.3e-54 217.2 318 42.5
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.7e-53 212.6 372 38.4
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.2e-52 210.7 328 39.6
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.8e-51 207.6 202 55.0
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 5.9e-50 202.6 401 37.4
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 6.6e-49 199.1 236 47.5
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.3e-48 196.8 242 53.7
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.8e-46 191.0 479 30.7
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 2.3e-46 190.7 193 55.4
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 2.0e-45 187.6 151 60.9
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.4e-45 186.8 157 60.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.1e-43 181.8 265 46.0
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 8.0e-39 165.6 157 52.9
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 5.2e-38 162.9 371 32.9
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 6.4e-36 156.0 324 33.0
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.3e-33 148.3 203 49.3
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 8.6e-33 145.6 366 33.6
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.6e-26 124.8 388 28.4
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 4.6e-26 123.2 369 28.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 5.1e-25 119.8 200 38.0
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 8.6e-25 119.0 102 64.7
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 4.3e-24 116.7 77 74.0
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 5.8e-21 106.3 86 65.1
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 3.8e-20 103.6 92 57.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.7e-17 94.7 77 53.2
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 5.1e-17 93.2 84 51.2
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 9.6e-16 89.0 93 51.6
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 3.2e-11 73.9 59 61.0


User provided reference genes

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