Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00247g0020335 Lotus japonicus HOM05D007735 ORTHO05D009638 1.7e-76 289.3 146 100.0
Glyma.16G114400 Glycine max HOM05D007735 ORTHO05D009638 1.8e-41 172.9 149 67.1
Glyma.09G195900 Glycine max HOM05D007735 ORTHO05D009638 4.3e-40 168.3 144 67.4
Glyma.01G156500 Glycine max HOM05D007735 ORTHO05D009638 6.3e-39 164.5 148 66.2
Glyma.11G088300 Glycine max HOM05D007735 ORTHO05D009638 2.4e-38 162.5 148 63.5
VMungo1215G0699 Vigna mungo HOM05D007735 ORTHO05D009638 3.1e-38 162.2 148 64.2
Medtr8g072610 Medicago truncatula HOM05D007735 ORTHO05D009638 4.1e-38 161.8 135 68.9
TPR.G19311 Trifolium pratense HOM05D007735 ORTHO05D009638 6.9e-38 161.0 147 63.9
Phvul.002G119100 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 5.9e-37 157.9 148 64.2
VMungo0251G0553 Vigna mungo HOM05D007735 ORTHO05D009638 8.5e-36 154.1 144 64.6
Phvul.003G272000 Phaseolus vulgaris HOM05D007735 ORTHO05D009638 5.5e-35 151.4 144 61.8
Ca_25020_v3 Cicer arietinum L. HOM05D007735 ORTHO05D009638 3.6e-34 148.7 148 59.5
Psat4g107200 Pisum sativum HOM05D007735 ORTHO05D009638 3.6e-34 148.7 146 61.0
Lalb_Chr09g0324871 Lupinus albus HOM05D007735 ORTHO05D009638 3.0e-33 145.6 143 60.1
Lalb_Chr16g0380221 Lupinus albus HOM05D007735 ORTHO05D009638 3.9e-33 145.2 143 58.7
TPR.G33757 Trifolium pratense HOM05D001957 ORTHO05D002015 3.9e-33 145.2 152 58.6
Medtr5g024910 Medicago truncatula HOM05D007735 ORTHO05D009638 6.7e-33 144.4 151 60.3
Psat2g147360 Pisum sativum HOM05D007735 ORTHO05D009638 6.3e-31 137.9 152 54.6
Lalb_Chr05g0214991 Lupinus albus HOM05D007735 ORTHO05D009638 7.7e-29 131.0 143 56.6
Lalb_Chr05g0229481 Lupinus albus HOM05D007735 ORTHO05D009638 1.2e-26 123.6 138 58.0
Lj2g0017807 Lotus japonicus HOM05D007735 ORTHO05D009638 2.3e-25 119.4 141 55.3
arahy.Tifrunner.gnm1.ann1.Q37N58 Arachis hypogaea HOM05D007735 ORTHO05D009638 1.1e-24 117.1 127 58.3
arahy.Tifrunner.gnm1.ann1.S9U9HD Arachis hypogaea HOM05D007735 ORTHO05D009638 1.1e-24 117.1 127 58.3
TAR381G1223 Trochodendron aralioides HOM05D007735 ORTHO05D009638 1.0e-17 94.0 125 48.0
RcHm_v2.0_Chr2g0096741 Rosa chinensis HOM05D007735 ORTHO05D009638 6.7e-17 91.3 129 49.6
Prupe.7G187700 Prunus persica HOM05D007735 ORTHO05D009638 2.6e-16 89.4 153 47.1
Cc07_g12240 Coffea canephora HOM05D007735 ORTHO05D009638 7.4e-16 87.8 133 45.1
Cfa007115 Carpinus fangiana HOM05D007735 ORTHO05D009638 2.8e-15 85.9 132 47.7
Manes.02G117000 Manihot esculenta HOM05D007735 ORTHO05D009638 8.2e-15 84.3 134 43.3
QL06p053348 Quercus lobata HOM05D007735 ORTHO05D009638 8.2e-15 84.3 130 45.4
Eucgr.J02566 Eucalyptus grandis HOM05D007735 ORTHO05D009638 1.4e-14 83.6 158 40.5
FvH4_1g09950 Fragaria vesca HOM05D007735 ORTHO05D009638 1.8e-14 83.2 128 44.5
FAN19G1654 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.8e-14 83.2 128 44.5
FAN23G3070 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.8e-14 83.2 127 47.2
FAN26G0974 Fragaria x ananassa HOM05D007735 ORTHO05D009638 1.8e-14 83.2 125 45.6
FAN23G2983 Fragaria x ananassa HOM05D007735 ORTHO05D009638 2.4e-14 82.8 125 47.2
CSS0025501 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 4.1e-14 82.0 125 44.8
FAN28G1635 Fragaria x ananassa HOM05D007735 ORTHO05D009638 9.1e-14 80.9 128 44.5
Manes.01G157700 Manihot esculenta HOM05D007735 ORTHO05D009638 9.1e-14 80.9 137 46.0
CSS0016261 Camellia sinensis var. sinensis HOM05D007735 ORTHO05D009638 1.6e-13 80.1 125 43.2
arahy.Tifrunner.gnm1.ann1.KD7YUX Arachis hypogaea HOM05D007735 ORTHO05D009638 2.6e-13 79.3 137 48.2
Thecc.01G001800 Theobroma cacao HOM05D007735 ORTHO05D009638 3.5e-13 79.0 135 43.7
Solyc02g082240.1 Solanum lycopersicum HOM05D007735 ORTHO05D009638 4.5e-13 78.6 137 43.8
Potri.001G456700 Populus trichocarpa HOM05D007735 ORTHO05D009638 1.0e-12 77.4 116 44.8
Nn5g31061 Nelumbo nucifera HOM05D007735 ORTHO05D009638 1.7e-12 76.6 127 44.9
Sabra11G0130300 Salix brachista HOM05D007735 ORTHO05D009638 2.9e-12 75.9 128 44.5
Potri.011G145200 Populus trichocarpa HOM05D007735 ORTHO05D009638 3.8e-12 75.5 137 40.9
Sabra16G0309000 Salix brachista HOM05D007735 ORTHO05D009638 6.5e-12 74.7 120 47.5
Sopen02g026900 Solanum pennellii HOM05D007735 ORTHO05D009638 6.5e-12 74.7 140 40.7
Nitab4.5_0006309g0010 Nicotiana tabacum HOM05D007735 ORTHO05D009638 8.5e-12 74.3 123 43.1
PGSC0003DMG400013637 Solanum tuberosum HOM05D007735 ORTHO05D009638 2.5e-11 72.8 140 40.0
Sc03g0004120 Simmondsia chinensis HOM05D007735 ORTHO05D009638 5.5e-11 71.6 124 41.1
Nitab4.5_0000855g0160 Nicotiana tabacum HOM05D007735 ORTHO05D009638 7.2e-11 71.2 137 42.3
ECA246G0225 Erigeron canadensis HOM05D007735 ORTHO05D009638 1.2e-10 70.5 134 35.8
Peaxi162Scf00918g00052 Petunia axillaris HOM05D007735 ORTHO05D009638 2.1e-10 69.7 132 41.7
Lsat_1_v5_gn_3_69161 Lactuca sativa HOM05D007735 ORTHO05D009638 1.0e-09 67.4 132 40.9
Aqoxy6G03024 Aquilegia oxysepala HOM05D007735 ORTHO05D009638 2.3e-09 66.2 126 39.7
Nitab4.5_0004448g0030 Nicotiana tabacum HOM05D007735 ORTHO05D009638 4.0e-09 65.5 137 39.4
Lsat_1_v5_gn_8_114121 Lactuca sativa HOM05D007735 ORTHO05D009638 5.2e-09 65.1 112 43.8
Haze_22869 Corylus avellana HOM05D007735 ORTHO05D009638 1.2e-08 63.9 132 40.2
Eucgr.I02199 Eucalyptus grandis HOM05D007735 ORTHO05D009638 4.4e-08 62.0 157 31.8
ATR0605G038 Amborella trichopoda HOM05D007735 ORTHO05D009638 5.7e-08 61.6 108 44.4
COL.COLO4_22568 Corchorus olitorius HOM05D007735 ORTHO05D009638 5.7e-08 61.6 139 42.4
Lsat_1_v5_gn_8_114101 Lactuca sativa HOM05D007735 ORTHO05D009638 7.5e-08 61.2 103 44.7
ClCG10G000110 Citrullus lanatus HOM05D007735 ORTHO05D009638 1.3e-07 60.5 106 36.8
Lsat_1_v5_gn_2_74220 Lactuca sativa HOM05D007735 ORTHO05D009638 1.7e-07 60.1 135 35.6
CsaV3_3G000130 Cucumis sativus L. HOM05D007735 ORTHO05D009638 2.2e-07 59.7 126 35.7
CsaV3_UNG155170 Cucumis sativus L. HOM05D007735 ORTHO05D009638 2.2e-07 59.7 126 35.7
CiPaw.07G000500 Carya illinoinensis HOM05D007735 ORTHO05D009638 2.8e-07 59.3 126 37.3
CiPaw.07G132500 Carya illinoinensis HOM05D007735 ORTHO05D009638 3.7e-07 58.9 132 37.1
Sed0019252 Sechium edule HOM05D007735 ORTHO05D009638 4.8e-07 58.5 112 37.5
MELO3C013706.2 Cucumis melo HOM05D007735 ORTHO05D009638 8.2e-07 57.8 126 34.9
DCAR_014121 Daucus carota HOM05D007735 ORTHO05D009638 1.4e-06 57.0 123 37.4
DCAR_014122 Daucus carota HOM05D007735 ORTHO05D009638 1.4e-06 57.0 123 37.4
Oeu043409.2 Olea europaea HOM05D007735 ORTHO05D009638 1.4e-06 57.0 116 34.5
SGA_v2.0_scaffold108G30951 Striga asiatica HOM05D007735 ORTHO05D009638 1.8e-06 56.6 131 32.8
Nn6g31607 Nelumbo nucifera HOM05D007735 ORTHO05D009638 2.4e-06 56.2 130 37.7
Oeu045753.2 Olea europaea HOM05D007735 ORTHO05D009638 5.3e-06 55.1 137 33.6
Gorai.012G025100 Gossypium raimondii HOM05D007735 ORTHO05D009638 7.0e-06 54.7 130 39.2


User provided reference genes

Program Settings