Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 5.3e-239 830.5 380 100.0
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 5.3e-239 830.5 380 100.0
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 4.2e-236 820.8 380 98.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.9e-228 795.4 380 97.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 5.2e-210 734.2 380 87.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 8.2e-208 726.9 380 86.3
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.8e-207 725.7 380 86.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 5.9e-206 720.7 380 86.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 6.5e-205 717.2 380 85.0
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 4.0e-202 708.0 380 88.2
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 5.2e-202 707.6 380 84.7
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 6.7e-202 707.2 380 84.2
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.6e-198 696.0 380 82.9
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 8.5e-197 690.3 380 82.4
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 1.5e-196 689.5 380 82.4
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.7e-192 676.0 380 78.4
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.7e-192 674.9 380 77.9
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 2.4e-191 672.2 380 78.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 4.1e-191 671.4 380 79.5
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 4.1e-191 671.4 380 77.4
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 5.4e-191 671.0 380 78.2
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.3e-189 666.4 380 77.6
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 8.6e-189 663.7 380 78.2
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.9e-188 662.5 380 78.4
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 2.5e-188 662.1 380 77.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 4.7e-187 657.9 380 76.8
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 4.7e-187 657.9 380 77.6
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.1e-187 657.5 380 77.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.0e-186 656.8 380 76.3
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 1.4e-186 656.4 380 77.1
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.4e-186 656.4 380 77.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.3e-186 655.6 380 76.3
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 5.2e-186 654.4 380 76.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.2e-186 654.4 380 76.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.9e-186 653.7 380 76.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 8.9e-186 653.7 380 77.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.2e-184 649.0 380 75.3
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.2e-184 649.0 380 75.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 8.3e-184 647.1 380 76.8
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.1e-183 646.7 380 76.3
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 4.1e-183 644.8 380 75.5
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 9.2e-183 643.7 380 75.5
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 9.2e-183 643.7 380 76.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.2e-182 643.3 380 75.3
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 2.7e-182 642.1 381 75.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.7e-182 642.1 380 75.5
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.5e-182 641.7 380 75.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.5e-182 641.7 380 75.3
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 3.5e-182 641.7 380 75.5
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 7.8e-182 640.6 380 75.0
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.0e-181 640.2 380 75.0
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.7e-181 639.4 380 74.7
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.7e-181 639.4 380 76.1
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.3e-181 639.0 380 75.0
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 3.8e-181 638.3 380 74.2
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 5.0e-181 637.9 382 74.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 5.0e-181 637.9 397 72.8
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 6.6e-181 637.5 380 74.5
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.5e-180 635.6 380 74.7
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 3.3e-180 635.2 380 74.2
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 4.3e-180 634.8 381 73.8
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 9.5e-180 633.6 433 67.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 2.1e-179 632.5 380 73.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.1e-179 632.5 381 73.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 2.8e-179 632.1 381 73.2
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 3.6e-179 631.7 380 73.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.0e-179 630.6 384 73.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.8e-178 629.4 385 72.5
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 2.3e-178 629.0 382 73.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 3.0e-178 628.6 382 73.0
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.0e-178 628.6 380 75.0
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.5e-177 626.3 381 72.2
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.4e-177 624.8 383 73.1
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.4e-177 624.8 383 73.1
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 7.5e-177 624.0 382 74.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 9.8e-177 623.6 380 74.2
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.3e-176 623.2 381 71.9
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.3e-176 623.2 380 71.6
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.7e-176 622.9 380 71.3
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 3.7e-176 621.7 381 72.4
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.9e-176 621.3 381 72.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.8e-175 619.4 358 76.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.4e-175 619.0 415 69.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 4.1e-175 618.2 380 70.8
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.5e-174 615.1 381 71.9
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.8e-174 614.0 410 69.0
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 1.3e-173 613.2 377 73.2
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.3e-173 613.2 381 71.7
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.6e-173 610.5 380 71.3
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.2e-171 606.7 387 71.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 4.7e-171 604.7 391 70.3
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 8.0e-171 604.0 327 88.1
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 5.2e-170 601.3 399 70.2
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 5.4e-167 591.3 380 70.0
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 1.2e-166 590.1 380 68.7
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 8.6e-165 583.9 395 68.6
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 8.6e-165 583.9 387 66.9
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 6.2e-163 577.8 321 78.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.1e-163 577.4 327 77.7
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.4e-161 572.0 334 75.7
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 2.4e-159 565.8 465 58.3
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.0e-157 560.5 380 70.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.3e-157 560.1 380 63.9
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.7e-157 559.7 321 77.6
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 3.9e-157 558.5 417 61.9
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.2e-153 547.0 508 54.3
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.3e-152 543.5 381 66.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.6e-149 531.2 306 77.1
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.2e-145 520.4 381 63.5
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 7.6e-145 517.7 380 64.5
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 4.2e-143 511.9 380 65.0
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.6e-142 510.0 308 74.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.3e-139 500.4 381 59.8
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 5.8e-137 491.5 323 67.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.2e-136 489.6 380 58.2
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.2e-134 483.8 384 58.1
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 7.6e-129 464.5 271 76.4
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.7e-123 445.7 383 54.6
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.1e-114 417.5 357 56.6
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.5e-97 359.0 220 71.8
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.7e-94 349.0 202 76.2
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 6.7e-85 318.5 416 39.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.7e-78 295.8 186 72.0
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.3e-72 277.7 162 77.2
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.8e-60 235.0 148 69.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 8.3e-59 231.9 364 39.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 8.0e-54 215.3 110 83.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.8e-49 198.7 148 56.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.6e-46 189.9 118 70.3
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 7.1e-42 175.6 110 70.0
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.6e-38 164.5 187 46.5
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.2e-36 158.3 312 32.4
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.7e-35 154.5 188 45.2
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 5.6e-31 139.4 81 76.5
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.4e-28 129.8 79 72.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 4.2e-18 96.7 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.3e-18 95.5 61 65.6
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.1e-10 69.3 53 58.5
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.6e-09 68.2 41 63.4


User provided reference genes

Program Settings