Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 7.6e-158 560.5 283 100.0
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 8.8e-114 414.1 331 69.5
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 2.6e-113 412.5 277 79.4
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 3.7e-112 408.7 283 76.0
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 1.6e-110 403.3 283 76.0
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 2.6e-110 402.5 287 74.9
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 1.5e-108 396.7 278 73.0
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 1.9e-108 396.4 265 77.4
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 3.2e-108 395.6 288 72.6
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 5.5e-108 394.8 257 77.0
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 5.5e-108 394.8 263 77.9
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 1.6e-107 393.3 282 71.6
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 2.1e-107 392.9 241 80.9
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 2.7e-107 392.5 285 71.6
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 4.7e-107 391.7 287 70.7
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 6.1e-107 391.3 256 77.3
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 8.0e-107 391.0 290 72.1
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 8.0e-107 391.0 234 82.9
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 8.0e-107 391.0 269 76.2
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 1.0e-106 390.6 242 81.0
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 3.0e-106 389.0 282 72.3
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 4.0e-106 388.7 259 74.9
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 6.7e-106 387.9 291 69.1
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 8.8e-106 387.5 235 84.7
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 8.8e-106 387.5 245 78.8
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 1.2e-105 387.1 256 77.7
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 2.0e-105 386.3 240 78.3
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 5.7e-105 384.8 233 81.5
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 9.7e-105 384.0 232 81.0
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 9.7e-105 384.0 237 80.2
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 1.3e-104 383.6 235 80.9
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 1.7e-104 383.3 285 70.9
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 2.2e-104 382.9 287 72.8
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 2.8e-104 382.5 285 70.2
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 3.7e-104 382.1 373 59.0
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 6.3e-104 381.3 297 69.0
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 1.4e-103 380.2 292 71.9
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 1.8e-103 379.8 233 81.5
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 1.8e-103 379.8 234 80.3
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 1.8e-103 379.8 258 73.6
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 1.8e-103 379.8 287 71.4
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 2.4e-103 379.4 242 78.9
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 3.1e-103 379.0 313 65.2
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 3.1e-103 379.0 230 80.4
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.1e-103 378.6 250 77.6
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 5.3e-103 378.3 244 77.0
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 5.3e-103 378.3 235 80.9
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 7.0e-103 377.9 279 71.7
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 1.2e-102 377.1 279 71.7
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 1.6e-102 376.7 279 71.3
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 3.5e-102 375.6 292 70.5
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 3.5e-102 375.6 261 73.6
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 5.9e-102 374.8 274 71.2
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 5.9e-102 374.8 268 72.8
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 1.7e-101 373.2 305 66.2
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 2.2e-101 372.9 236 78.4
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 3.8e-101 372.1 230 80.0
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 3.8e-101 372.1 230 80.0
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 1.1e-100 370.5 234 77.8
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 2.5e-100 369.4 229 79.0
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 1.2e-99 367.1 289 68.5
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 1.2e-99 367.1 243 78.6
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 1.6e-99 366.7 253 74.7
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 2.7e-99 365.9 247 73.7
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 3.6e-99 365.5 290 67.2
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 6.1e-99 364.8 296 66.6
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 6.1e-99 364.8 233 79.0
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 6.1e-99 364.8 269 72.9
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 8.0e-99 364.4 226 77.9
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 1.0e-98 364.0 293 68.3
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 1.4e-98 363.6 255 74.9
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 2.3e-98 362.8 242 75.6
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 5.2e-98 361.7 295 67.5
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 5.2e-98 361.7 295 67.5
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 5.2e-98 361.7 248 75.0
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 6.8e-98 361.3 290 66.2
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 8.8e-98 360.9 292 66.8
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 1.2e-97 360.5 257 72.8
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 1.2e-97 360.5 294 68.0
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 1.5e-97 360.1 282 69.9
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 4.4e-97 358.6 240 74.2
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 9.8e-97 357.5 209 82.8
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 1.3e-96 357.1 230 74.3
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 1.3e-96 357.1 234 75.2
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 1.3e-96 357.1 238 74.4
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 1.3e-96 357.1 237 75.9
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 2.8e-96 355.9 236 73.7
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 3.7e-96 355.5 265 71.3
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 3.7e-96 355.5 231 74.0
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 6.3e-96 354.8 229 76.0
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.1e-95 354.0 265 70.9
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.4e-95 353.6 265 70.9
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 1.4e-95 353.6 265 70.9
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 4.5e-94 348.6 245 72.2
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 5.0e-93 345.1 313 61.3
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 6.5e-93 344.7 284 65.1
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 1.2e-89 334.0 229 69.9
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 7.5e-89 331.3 234 69.7
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 2.3e-85 319.7 283 64.0
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 1.9e-76 290.0 279 60.2
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 8.0e-75 284.6 196 74.0
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 1.3e-72 277.3 228 61.8
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 8.3e-72 274.6 237 57.0
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 1.4e-71 273.9 202 65.3
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 3.0e-69 266.2 217 67.3
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 2.1e-67 260.0 201 67.2
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 2.4e-63 246.5 221 61.1
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 1.0e-61 241.1 205 59.0
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 5.3e-42 175.6 273 44.3
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 9.6e-36 154.8 175 53.1
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 1.4e-31 141.0 183 42.1
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 2.4e-31 140.2 174 42.0
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 5.5e-31 139.0 95 75.8
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 8.7e-29 131.7 183 39.3
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 6.2e-27 125.6 92 71.7
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 5.3e-26 122.5 119 58.0
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 4.2e-23 112.8 132 43.2
GSVIVG01036421001 Vitis vinifera HOM05D006690 ORTHO05D008541 1.7e-08 64.3 110 42.7
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 5.5e-07 59.3 150 32.7
Cre02.g093650 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D044287 3.6e-06 56.6 126 31.7


User provided reference genes

Program Settings