Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 4.7e-140 501.1 245 100.0
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 6.9e-83 311.2 245 67.8
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 7.2e-80 301.2 228 68.0
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 2.1e-79 299.7 230 67.8
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 1.8e-75 286.6 236 63.6
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 3.1e-75 285.8 219 66.2
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 7.2e-72 274.6 201 70.1
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 2.7e-71 272.7 235 62.1
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 2.0e-61 240.0 233 57.1
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 4.4e-61 238.8 243 56.0
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 3.7e-60 235.7 239 53.6
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 6.3e-60 235.0 233 56.2
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.1e-59 234.2 245 53.9
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 1.4e-59 233.8 231 56.3
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 4.1e-59 232.3 215 56.7
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 4.1e-59 232.3 225 56.9
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 5.4e-59 231.9 221 58.8
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 1.2e-58 230.7 227 54.6
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 2.3e-57 226.5 231 55.4
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 2.3e-57 226.5 229 55.5
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.3e-57 226.5 205 59.0
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 3.8e-57 225.7 232 54.7
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 6.5e-57 224.9 237 55.3
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 1.5e-56 223.8 242 53.7
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 4.2e-56 222.2 240 52.5
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 2.8e-55 219.5 239 51.5
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 3.6e-55 219.2 234 52.1
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 8.0e-55 218.0 211 55.9
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 1.0e-54 217.6 234 53.4
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 1.0e-54 217.6 245 51.0
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.0e-54 215.7 234 52.6
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 5.2e-54 215.3 201 57.7
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.5e-53 213.8 227 50.7
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 2.0e-53 213.4 236 50.4
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 2.6e-53 213.0 204 55.9
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 3.4e-53 212.6 238 52.1
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 4.4e-53 212.2 212 57.1
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 7.5e-53 211.5 210 55.7
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 2.2e-52 209.9 201 56.7
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 2.2e-52 209.9 237 51.1
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.7e-52 209.1 244 49.6
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 6.3e-52 208.4 219 53.9
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 8.3e-52 208.0 233 51.5
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 3.1e-51 206.1 192 57.3
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 5.4e-51 205.3 198 56.6
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 1.2e-50 204.1 207 56.0
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 1.6e-50 203.8 204 55.4
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 2.0e-50 203.4 246 48.8
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 2.0e-50 203.4 232 47.8
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 3.5e-50 202.6 198 56.1
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 7.8e-50 201.4 205 51.7
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.3e-49 199.9 233 51.5
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.1e-48 197.6 201 54.2
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 1.5e-48 197.2 231 48.9
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 1.9e-48 196.8 179 55.9
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 1.9e-48 196.8 220 50.9
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 2.5e-48 196.4 202 52.0
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 2.5e-48 196.4 183 56.8
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 4.3e-48 195.7 210 50.5
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 7.3e-48 194.9 214 51.4
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 7.3e-48 194.9 233 51.9
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 9.5e-48 194.5 274 43.4
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 9.5e-48 194.5 270 44.8
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 1.6e-47 193.7 220 50.5
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 2.1e-47 193.4 231 47.2
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 6.1e-47 191.8 186 54.3
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 8.0e-47 191.4 231 47.6
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 1.0e-46 191.0 271 45.8
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.4e-46 190.7 237 49.4
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 4.0e-46 189.1 154 62.3
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 6.8e-46 188.3 155 62.6
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.2e-45 187.6 131 67.9
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 1.2e-45 187.6 131 67.9
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 1.5e-45 187.2 159 59.7
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 2.0e-45 186.8 153 62.7
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 2.0e-45 186.8 226 47.8
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 2.6e-45 186.4 223 50.2
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 7.5e-45 184.9 169 57.4
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 7.5e-45 184.9 185 54.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 7.5e-45 184.9 169 57.4
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 2.2e-44 183.3 230 47.4
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 2.2e-44 183.3 237 48.5
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 3.7e-44 182.6 133 66.9
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 3.7e-44 182.6 199 53.8
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 4.9e-44 182.2 214 49.5
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.4e-44 181.8 168 56.5
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 6.4e-44 181.8 168 56.5
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 1.1e-43 181.0 190 52.6
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 1.1e-43 181.0 172 57.0
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 1.8e-43 180.3 203 52.2
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 1.8e-43 180.3 133 66.9
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.8e-43 180.3 170 56.5
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 2.4e-43 179.9 195 53.3
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 2.4e-43 179.9 182 55.5
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 2.4e-43 179.9 202 47.0
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 9.2e-43 177.9 213 48.8
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-42 177.6 226 47.3
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 2.0e-42 176.8 159 59.1
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 2.7e-42 176.4 154 59.1
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 5.9e-42 175.3 206 48.5
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 3.0e-41 172.9 219 48.4
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 1.9e-40 170.2 174 52.9
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 2.5e-40 169.9 199 48.2
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 1.4e-38 164.1 201 48.3
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 1.4e-38 164.1 230 44.8
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 3.1e-38 162.9 230 44.3
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 1.4e-35 154.1 210 44.8
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 3.2e-35 152.9 158 53.2
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 5.4e-35 152.1 119 66.4
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 2.7e-34 149.8 121 58.7
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 1.3e-33 147.5 127 55.9
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 4.3e-32 142.5 112 67.0
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 9.5e-32 141.4 170 47.1
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 8.1e-31 138.3 114 53.5
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 6.8e-30 135.2 117 53.0
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 2.1e-26 123.6 152 45.4
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 7.8e-26 121.7 139 46.0
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 1.3e-25 120.9 136 47.1
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 1.7e-25 120.6 87 69.0
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 4.0e-22 109.4 198 38.9
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 2.0e-21 107.1 224 36.6
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 2.6e-21 106.7 83 59.0
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 1.1e-14 84.7 111 45.9
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 1.9e-11 73.9 76 59.2


User provided reference genes

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